Browse Element(s) Details


OsAffx.26361.1.S1_x_at

Description tigr:9632.m03516
TID=OsAffx.26361.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Lipoxygenase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3743011/11Lipoxygenase 5, putative, expressed
LOC_Os05g287701/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g37410OsAffx.14174.1.S1_at11/114+22065231..22066560hypothetical protein
LOC_Os04g37420OsAffx.26360.1.S1_at11/114+22068482..22068706hypothetical protein
LOC_Os04g37430OsAffx.26361.1.S1_x_at11/114+22085990..22090232Lipoxygenase 5, putative, expressed
LOC_Os04g37430OsAffx.26361.1.S1_at11/114+22085990..22090232Lipoxygenase 5, putative, expressed
LOC_Os04g37440OsAffx.14175.1.S1_at11/114+22093180..22093638hypothetical protein
LOC_Os04g37450Os.57139.1.S1_at11/114+22094083..22094851expressed protein
LOC_Os04g37460Os.12927.1.S1_at11/114+22095005..22097350Glutamate decarboxylase, putative, expressed
LOC_Os04g37470Os.21320.1.S1_at10/114+22097743..22100498NADH dependent 6'-deoxychalcone synthase, putative, expressed
LOC_Os04g37480Os.8600.1.S1_at11/114+22102247..22104485NADH-dependent oxidoreductase 1, putative, expressed
LOC_Os04g37490Os.11816.1.S1_at11/114+22104786..22107807NADH-dependent oxidoreductase 2, putative, expressed
LOC_Os04g37500Os.1215.1.S1_at11/114+22111117..22113470Glutamate decarboxylase, putative, expressed
LOC_Os04g37510OsAffx.26362.1.S1_at11/114+22113602..22114033uncharacterized plant-specific domain TIGR01568 family protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009414biological_processresponse to water deprivation
GO:0009611biological_processresponse to wounding
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009688biological_processabscisic acid biosynthesis
GO:0009695biological_processjasmonic acid biosynthesis
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0030397biological_processmembrane disassembly
GO:0040007biological_processgrowth
GO:0009507cellular_componentchloroplast
GO:0016165molecular_functionlipoxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26361.1.S1_x_at--207--3491Chr04:22089405..22089429 (25 bp)
CAGGCGGACTACGAGCTGCAGTCGT
LOC_Os04g37430
OsAffx.26361.1.S1_x_at--112--9951Chr04:22089414..22089438 (25 bp)
TACGAGCTGCAGTCGTGGTACGCCG
LOC_Os04g37430
OsAffx.26361.1.S1_x_at--1127--7492Chr05:16790947..16790970 (24 bp)
GTGGTACGCCGAGGCCGTGCAGAGC
LOC_Os05g28770
OsAffx.26361.1.S1_x_at--398--9051Chr04:22089445..22089469 (25 bp)
TGCAGAGCGGGCACGCGGACAAGCG
LOC_Os04g37430
OsAffx.26361.1.S1_x_at--515--1711Chr04:22089525..22089549 (25 bp)
ACCACCCTGGTGTGGCTCTGCTCGG
LOC_Os04g37430
OsAffx.26361.1.S1_x_at--496--8251Chr04:22089574..22089598 (25 bp)
GGCAGTACCCGCTCGGTGGCTACAT
LOC_Os04g37430
OsAffx.26361.1.S1_x_at--793--1071Chr04:22089640..22089664 (25 bp)
AGGGCGACCCAGAGTACGCGCACCT
LOC_Os04g37430
OsAffx.26361.1.S1_x_at--25--1851Chr04:22089711..22089735 (25 bp)
ACGCAGACCACGACGTTCATGACCG
LOC_Os04g37430
OsAffx.26361.1.S1_x_at--1119--1851Chr04:22089720..22089744 (25 bp)
ACGACGTTCATGACCGTCATCGACA
LOC_Os04g37430
OsAffx.26361.1.S1_x_at--62--10551Chr04:22089726..22089750 (25 bp)
TTCATGACCGTCATCGACACGCTGT
LOC_Os04g37430
OsAffx.26361.1.S1_x_at--430--9171Chr04:22089928..22089952 (25 bp)
TGCCGTACGAGCTGATGGCGCCGTC
LOC_Os04g37430
Target Sequence 
CAGGCGGACTACGAGCTGCAGTCGTGGTACGCCGAGGCCGTGCAGAGCGGGCACGCGGACAAGCGCGGCGCGCCGTGGTG
GCCGCGCCTCTCGACGCCCGGCGACCTGGCCTCCCTGCTCACCACCCTGGTGTGGCTCTGCTCGGCGCAGCACGCGGCGC
TCAACTTCGGGCAGTACCCGCTCGGTGGCTACATCCCGAACCGCCCGCCGCTGATGCGCCGCCTGGTGCCCGCCGAGGGC
GACCCAGAGTACGCGCACCTCGTCGCCGACCCGCACCGCTTCTTCCTCTCGGCGCTGCCCAGCCTGACGCAGACCACGAC
GTTCATGACCGTCATCGACACGCTGTCCACGCACTCCGCCGACGAGGAGTACCTCGGGGAGCGCCCCGACGAGGCGTGGA
CGGCCGACCCGGCGGCGCTGGCGGCCGCGCGGGAGTTCGCGGCCGACGTGCGCCGCGCCGAGGAGGAGATCGAGCGGCGC
AATGCCGACCCCTCCCGGCGCAACCGTTGCGGCGCCGGCGTGCTGCCGTACGAGCTGATGGCGCCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26361.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis