Browse Element(s) Details


OsAffx.26401.1.S1_at

Description tigr:9632.m03809
TID=OsAffx.26401.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4011011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40070OsAffx.4035.1.S1_x_at11/114+23640224..23644135C2 domain-containing protein, putative, expressed
LOC_Os04g40070Os.49734.1.A1_at11/114+23640224..23644135C2 domain-containing protein, putative, expressed
LOC_Os04g40080Os.6250.1.S1_at11/114+23645064..23648120Leucine Rich Repeat family protein, expressed
LOC_Os04g40090Os.49749.1.S1_at11/114+23648459..23652978Zinc finger, ZZ type family protein, expressed
LOC_Os04g40100Os.21022.1.S1_at10/114+23657229..23659836NPH3 family protein, expressed
LOC_Os04g40110OsAffx.26401.1.S1_at11/114+23661918..23662253hypothetical protein
LOC_Os04g40120NANA4+23662749..23663234hypothetical protein
LOC_Os04g40130Os.51821.1.S1_at11/114+23663563..23666129Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g40140Os.23932.1.A1_at11/114+23666492..23670448expressed protein
LOC_Os04g40140Os.11595.2.S1_at1/114+23666492..23670448expressed protein
LOC_Os04g40150Os.12301.1.S1_at11/114+23673726..23677378glycosyl transferase family 17 protein, putative, expressed
LOC_Os04g40160OsAffx.26402.1.S1_at11/114+23678469..23682309hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26401.1.S1_at--1012--7271Chr04:23661948..23661972 (25 bp)
GTGCCGGCAAATCGAAGCAACAACG
LOC_Os04g40110
OsAffx.26401.1.S1_at--948--3031Chr04:23661957..23661981 (25 bp)
AATCGAAGCAACAACGGCGCAGTTT
LOC_Os04g40110
OsAffx.26401.1.S1_at--589--2571Chr04:23661969..23661993 (25 bp)
AACGGCGCAGTTTCCCGAGTATGCC
LOC_Os04g40110
OsAffx.26401.1.S1_at--663--4031Chr04:23662070..23662094 (25 bp)
CGTTCCTTGCCCAAAGCTGATGAAA
LOC_Os04g40110
OsAffx.26401.1.S1_at--438--2691Chr04:23662083..23662107 (25 bp)
AAGCTGATGAAACTACACGGCCCTC
LOC_Os04g40110
OsAffx.26401.1.S1_at--952--2531Chr04:23662093..23662117 (25 bp)
AACTACACGGCCCTCTATTGGGCAT
LOC_Os04g40110
OsAffx.26401.1.S1_at--432--10231Chr04:23662108..23662132 (25 bp)
TATTGGGCATCGTGACGCTCTGCGA
LOC_Os04g40110
OsAffx.26401.1.S1_at--623--4251Chr04:23662142..23662166 (25 bp)
CCGGGCCGAGCTAGCAGACATATTT
LOC_Os04g40110
OsAffx.26401.1.S1_at--830--3711Chr04:23662152..23662176 (25 bp)
CTAGCAGACATATTTGGCTTTGGGA
LOC_Os04g40110
OsAffx.26401.1.S1_at--734--7711Chr04:23662178..23662202 (25 bp)
GGGTGAGACCACACTCCAGTGTGGA
LOC_Os04g40110
OsAffx.26401.1.S1_at--278--1991Chr04:23662190..23662214 (25 bp)
ACTCCAGTGTGGAGCATTGGCCGTG
LOC_Os04g40110
Target Sequence 
GTGCCGGCAAATCGAAGCAACAACGGCGCAGTTTCCCGAGTATGCCCTTCTCTCCAGTCCACCCCCTCGCCATCTTCTTC
CCCTGCGCGGGGTGACGCCTCTCCCCAACGCGGCTCCTTGCCCGTTCCTTGCCCAAAGCTGATGAAACTACACGGCCCTC
TATTGGGCATCGTGACGCTCTGCGAGGGTGCGGTCCGGGCCGAGCTAGCAGACATATTTGGCTTTGGGAGGGGTGAGACC
ACACTCCAGTGTGGAGCATTGGCCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26401.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis