Browse Element(s) Details


OsAffx.26402.1.S1_at

Description tigr:9632.m03813
TID=OsAffx.26402.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4016011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40100Os.21022.1.S1_at10/114+23657229..23659836NPH3 family protein, expressed
LOC_Os04g40110OsAffx.26401.1.S1_at11/114+23661918..23662253hypothetical protein
LOC_Os04g40120NANA4+23662749..23663234hypothetical protein
LOC_Os04g40130Os.51821.1.S1_at11/114+23663563..23666129Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g40140Os.23932.1.A1_at11/114+23666492..23670448expressed protein
LOC_Os04g40140Os.11595.2.S1_at1/114+23666492..23670448expressed protein
LOC_Os04g40150Os.12301.1.S1_at11/114+23673726..23677378glycosyl transferase family 17 protein, putative, expressed
LOC_Os04g40160OsAffx.26402.1.S1_at11/114+23678469..23682309hypothetical protein
LOC_Os04g40170OsAffx.14214.1.S1_at11/114+23692317..23692953hypothetical protein
LOC_Os04g40180Os.50983.1.S1_at11/114+23693789..23696092expressed protein
LOC_Os04g40190Os.11411.2.S1_a_at11/114+23695137..23697917expressed protein
LOC_Os04g40190Os.27023.1.A1_at10/114+23695137..23697917expressed protein
LOC_Os04g40190Os.46604.1.S1_s_at2/114+23695137..23697917expressed protein
LOC_Os04g40200OsAffx.26403.1.S1_at11/114+23699937..23701782HNH endonuclease domain-containing protein, putative
LOC_Os04g40200OsAffx.32172.1.S1_s_at1/114+23699937..23701782HNH endonuclease domain-containing protein, putative
LOC_Os04g40210NANA4+23704411..23705266transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26402.1.S1_at--61--2151Chr04:23682259..23682279 (21 bp)
ACAGATCGCCGTCTAATCAAAATCA
LOC_Os04g40160
OsAffx.26402.1.S1_at--190--3071Chr04:23680316..23680361 (25 bp)
AATCAAAATCAACGCACTCCAACGC
LOC_Os04g40160
OsAffx.26402.1.S1_at--188--2311Chr04:23680270..23680294 (25 bp)
AAAGGAGGGAGTGCCGCTGAACCTT
LOC_Os04g40160
OsAffx.26402.1.S1_at--806--5431Chr04:23680252..23680276 (25 bp)
GAACCTTGCGGTCGAGGACATCTCA
LOC_Os04g40160
OsAffx.26402.1.S1_at--1149--9111Chr04:23680246..23680270 (25 bp)
TGCGGTCGAGGACATCTCAAGGAAA
LOC_Os04g40160
OsAffx.26402.1.S1_at--290--5571Chr04:23680162..23680186 (25 bp)
GAAAGAGAATCAACCGCGACCTCGC
LOC_Os04g40160
OsAffx.26402.1.S1_at--885--8631Chr04:23680128..23680152 (25 bp)
TGGGACATAGACCAGCCAAGCTGCT
LOC_Os04g40160
OsAffx.26402.1.S1_at--336--9131Chr04:23680107..23680131 (25 bp)
TGCTGGAGGAGCACAGTTCCTGGAA
LOC_Os04g40160
OsAffx.26402.1.S1_at--124--6711Chr04:23680092..23680116 (25 bp)
GTTCCTGGAACAAACACCTGGACCA
LOC_Os04g40160
OsAffx.26402.1.S1_at--512--2171Chr04:23680079..23680103 (25 bp)
ACACCTGGACCAATTGTTGAGCATG
LOC_Os04g40160
OsAffx.26402.1.S1_at--321--1691Chr04:23680071..23680095 (25 bp)
ACCAATTGTTGAGCATGCCGGAAAT
LOC_Os04g40160
Target Sequence 
ACAGATCGCCGTCTAATCAAAATCAACGCACTCCAACGCCCTTCAAGGGAAGGAAGCCTTAAAGGAGGGAGTGCCGCTGA
ACCTTGCGGTCGAGGACATCTCAAGGAAAGGGGTGGAAACGAGCAGGAGGTAGACAAAAGGGTAATGGCCAAGGGGGAAC
TTGCAGATGAAAGAGAATCAACCGCGACCTCGCCGGAGGGCATGGGACATAGACCAGCCAAGCTGCTGGAGGAGCACAGT
TCCTGGAACAAACACCTGGACCAATTGTTGAGCATGCCGGAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26402.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis