Browse Element(s) Details


OsAffx.26456.1.S1_at

Description tigr:9632.m04247
TID=OsAffx.26456.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to NADPH-thioredoxin reductase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4426011/11Thioredoxin reductase 1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44230OsAffx.26455.1.S1_at11/114+25980070..25984574Cytokinin dehydrogenase 5 precursor, putative
LOC_Os04g44240Os.5250.1.S1_at11/114+25986970..25988687Cytokinin-O-glucosyltransferase 3, putative, expressed
LOC_Os04g44250OsAffx.4084.1.S1_at11/114+25994621..25996321UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g44260OsAffx.26456.1.S1_at11/114+25999104..25999649Thioredoxin reductase 1, putative
LOC_Os04g44270Os.50619.1.S1_x_at1/114+26004418..26007016retrotransposon protein, putative, unclassified
LOC_Os04g44280Os.54667.1.S1_at9/114+26008134..26009353Two-component response regulator ARR3, putative, expressed
LOC_Os04g44290Os.16373.1.A1_at11/114+26013773..26018424expressed protein
LOC_Os04g44300Os.17174.1.S1_at11/114+26017140..26021533transposon protein, putative, unclassified, expressed
LOC_Os04g44310OsAffx.26457.1.S1_at11/114+26022368..26023084hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005759cellular_componentmitochondrial matrix
GO:0005829cellular_componentcytosol
GO:0004791molecular_functionthioredoxin-disulfide reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26456.1.S1_at--329--1631Chr04:25999251..25999275 (25 bp)
ACCGCCGCGTCCTGGTTAGCGACGG
LOC_Os04g44260
OsAffx.26456.1.S1_at--560--9651Chr04:25999287..25999311 (25 bp)
TCAGCGAACGGGATCATCGGGACAC
LOC_Os04g44260
OsAffx.26456.1.S1_at--128--511Chr04:25999302..25999326 (25 bp)
ATCGGGACACGCGTGTGTGTCATCG
LOC_Os04g44260
OsAffx.26456.1.S1_at--153--1111Chr04:25999329..25999353 (25 bp)
AGTGGGCCGACGGTGTGCATCATCA
LOC_Os04g44260
OsAffx.26456.1.S1_at--833--7451Chr04:25999341..25999365 (25 bp)
GTGTGCATCATCAGGACCAGGCCGA
LOC_Os04g44260
OsAffx.26456.1.S1_at--35--3451Chr04:25999358..25999382 (25 bp)
CAGGCCGACGGTGCACACTTCGGTG
LOC_Os04g44260
OsAffx.26456.1.S1_at--1097--10551Chr04:25999428..25999452 (25 bp)
TTCTTCGGGAACGACATCGCCACGG
LOC_Os04g44260
OsAffx.26456.1.S1_at--824--1711Chr04:25999467..25999491 (25 bp)
ACCACCAGCACCGATGTTGAGAATT
LOC_Os04g44260
OsAffx.26456.1.S1_at--592--731Chr04:25999480..25999504 (25 bp)
ATGTTGAGAATTTCCCAGGCTTCCC
LOC_Os04g44260
OsAffx.26456.1.S1_at--965--1671Chr04:25999549..25999573 (25 bp)
AGCCTGTGCACTTCGGGACCAGGAT
LOC_Os04g44260
OsAffx.26456.1.S1_at--288--8091Chr04:25999564..25999588 (25 bp)
GGACCAGGATCGTCTCCGAGACTGT
LOC_Os04g44260
Target Sequence 
ACCGCCGCGTCCTGGTTAGCGACGGTCGCGGCCGCGTCAGCGAACGGGATCATCGGGACACGCGTGTGTGTCATCGGGAG
TGGGCCGACGGTGTGCATCATCAGGACCAGGCCGACGGTGCACACTTCGGTGGTCTACGTGGCGTGCGCCGAGCTCAAGC
CCGTGCTCTTCGAGGGCTTCTTCGGGAACGACATCGCCACGGGCCGGCAGCTCACCACCACCAGCACCGATGTTGAGAAT
TTCCCAGGCTTCCCCAACGGTATCCTCGACGCCGACCTCATGGACCGCTGCCGCGCGCAGCCTGTGCACTTCGGGACCAG
GATCGTCTCCGAGACTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26456.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis