Browse Element(s) Details


OsAffx.26471.1.S1_at

Description tigr:9632.m04347
TID=OsAffx.26471.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4522011/11hypothetical protein
LOC_Os09g334702/11Peroxisomal membrane carrier protein, putative, expressed
LOC_Os02g186101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45160OsAffx.14274.1.A1_at11/114+26476543..26481414expressed protein
LOC_Os04g45160Os.50910.1.S1_at11/114+26476543..26481414expressed protein
LOC_Os04g45160Os.50910.2.S1_x_at9/114+26476543..26481414expressed protein
LOC_Os04g45170OsAffx.26672.1.S1_x_at11/114+26487650..26489451serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os04g45170Os.56192.1.S1_at11/114+26487650..26489451serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os04g45180Os.52243.1.S1_at11/114+26490184..26493410EF hand family protein, expressed
LOC_Os04g45190Os.11087.1.A1_at11/114+26493468..26496659MSP domain containing protein, expressed
LOC_Os04g45190OsAffx.26470.1.S1_x_at6/114+26493468..26496659MSP domain containing protein, expressed
LOC_Os04g45190OsAffx.26470.1.S1_at4/114+26493468..26496659MSP domain containing protein, expressed
LOC_Os04g45190Os.24612.1.A1_at1/114+26493468..26496659MSP domain containing protein, expressed
LOC_Os04g45200Os.54567.1.S1_at11/114+26497361..26500426expressed protein
LOC_Os04g45200Os.54567.1.S1_x_at10/114+26497361..26500426expressed protein
LOC_Os04g45200OsAffx.26470.1.S1_at5/114+26497361..26500426expressed protein
LOC_Os04g45200OsAffx.26470.1.S1_x_at3/114+26497361..26500426expressed protein
LOC_Os04g45200Os.56488.1.S1_at1/114+26497361..26500426expressed protein
LOC_Os04g45210Os.49185.1.S1_at11/114+26500992..26501945Peroxisomal biogenesis factor 11 family protein, expressed
LOC_Os04g45220OsAffx.26471.1.S1_at11/114+26502932..26503540hypothetical protein
LOC_Os04g45230OsAffx.4096.1.S1_at11/114+26506311..26506652hypothetical protein
LOC_Os04g45240Os.23271.2.A1_x_at1/114+26508238..26517894expressed protein
LOC_Os04g45254NANA4+26523040..26523317NA
LOC_Os04g45270Os.10880.1.S1_at11/114+26527617..26529441Eukaryotic aspartyl protease family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0015884biological_processfolic acid transport
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005778cellular_componentperoxisomal membrane
GO:0009507cellular_componentchloroplast
GO:0009941cellular_componentchloroplast envelope
GO:0005488molecular_functionbinding
GO:0008517molecular_functionfolic acid transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26471.1.S1_at--510--9411Chr04:26503483..26503507 (25 bp)
TCGTCGGTGTGGTGTGGCTGTGGCC
LOC_Os04g45220
OsAffx.26471.1.S1_at--142--8651Chr04:26503465..26503489 (25 bp)
TGTGGCCTGTGGTCTCGTCGTCGAT
LOC_Os04g45220
OsAffx.26471.1.S1_at--40--9436Chr12:3649347..3649366 (20 bp)
TCGGTGGTGTGGCTGTGGCGTCGTC
NONE
OsAffx.26471.1.S1_at--571--2912Chr04:26503248..26503272 (25 bp)
AAGGAAGCGAGGACGGCAGGCCGGC
LOC_Os04g45220
OsAffx.26471.1.S1_at--490--2011Chr04:26503120..26503144 (25 bp)
ACTCTCTTCTCTTGGGTTAGCAGCT
LOC_Os04g45220
OsAffx.26471.1.S1_at--867--10571Chr04:26503114..26503138 (25 bp)
TTCTCTTGGGTTAGCAGCTTGGGTT
LOC_Os04g45220
OsAffx.26471.1.S1_at--287--66114Chr11:9743836..9743858 (23 bp)
GATTGGATGGGCCTTTTTAACTTCG
NONE
OsAffx.26471.1.S1_at--825--58111Chr10:132372..132391 (20 bp)
GACCGATTCCGAGTTCCGACGCAAA
NONE
OsAffx.26471.1.S1_at--107--6071Chr04:26502985..26503009 (25 bp)
GAGTTCCGACGCAAACTGCGATTAT
LOC_Os04g45220
OsAffx.26471.1.S1_at--895--5791Chr04:26502978..26503002 (25 bp)
GACGCAAACTGCGATTATCATATTT
LOC_Os04g45220
OsAffx.26471.1.S1_at--711--4632Chr08:16504289..16504354 (25 bp)
GCGATTATCATATTTGATTCCGTTT
NONE
Target Sequence 
TCGTCGGTGTGGTGTGGCTGTGGCCTGTGGTCTCGTCGTCGATGTCGCGTCGTCGTCGGTATGGCCGGCGTCGGTGGTGT
GGCTGTGGCGTCGTCGTCGCCTCGTCGGTGGTGGTGGCAGCGGCGAAAAGGCGAGAGGCGGCGGGACGGCGCCGCGAGAT
GGTGGGGGCGAGGACGGAGCGAAGAGGAAGGGCGGCGCGAGATGCGAGACGGCGGGGGCGAGGTCGCGGGGAGCCAAGGA
AGCGAGGACGGCAGGCCGGCGGTGGGTGGTGGCGCGCTCTGGATGCGCCGCTCCGCCGCCGCCTCTGGATGGCGATGCGC
CGCTCCCGGCCTCCCTCCCGATCTGTCTGACTTCTCTCTCTCCACTCTCTTCTCTTGGGTTAGCAGCTTGGGTTGGGCCG
GCTGGGGACTTGGGGAGGGATTATGGACTATTGATTGGATGGGCCTTTTTAACTTCGGAAATTTCGACAAATTTTCCGGA
ATGTTTCCGACCGATTCCGAGTTCCGACGCAAACTGCGATTATCATATTTGATTCCGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26471.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis