Browse Element(s) Details


OsAffx.26484.1.S1_at

Description tigr:9632.m04472
TID=OsAffx.26484.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4642010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46390Os.10148.1.S1_at11/114+27286392..27290953DnaJ protein homolog, putative, expressed
LOC_Os04g46400Os.54929.1.S1_at11/114+27298110..27299245AP2 domain containing protein, expressed
LOC_Os04g46410OsAffx.14299.2.S1_at11/114+27304305..27305048AP2 domain containing protein, expressed
LOC_Os04g46420OsAffx.26484.1.S1_at10/114+27306715..27306997hypothetical protein
LOC_Os04g46430OsAffx.26637.1.S1_x_at4/114+27310208..27311194hypothetical protein
LOC_Os04g46430OsAffx.26637.2.S1_x_at2/114+27310208..27311194hypothetical protein
LOC_Os04g46440Os.55643.1.S1_at11/114+27320783..27321770DRE binding factor 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26484.1.S1_at--183--3071Chr04:27306745..27306769 (25 bp)
AATCACTATTTCTGTATGCGGGTAC
LOC_Os04g46420
OsAffx.26484.1.S1_at--811--3311Chr04:27306748..27306769 (22 bp)
CACTATTTCTGTATGCGGGTACTTA
LOC_Os04g46420
OsAffx.26484.1.S1_at--289--3871Chr04:27306756..27306820 (25 bp)
CTGTATGCGGGTACTTAAGTCGCTT
LOC_Os04g46420
OsAffx.26484.1.S1_at--272--4671NONE
GCGGGTACTTAAGTCGCTTGAAGCT
NONE
OsAffx.26484.1.S1_at--585--2031Chr04:27306808..27306832 (25 bp)
ACTTAAGTCGCTTGAAGCTGCCCAT
LOC_Os04g46420
OsAffx.26484.1.S1_at--99--2851Chr04:27306812..27306836 (25 bp)
AAGTCGCTTGAAGCTGCCCATGGAT
LOC_Os04g46420
OsAffx.26484.1.S1_at--1126--9311Chr04:27306815..27306839 (25 bp)
TCGCTTGAAGCTGCCCATGGATCCT
LOC_Os04g46420
OsAffx.26484.1.S1_at--202--3831Chr04:27306825..27306849 (25 bp)
CTGCCCATGGATCCTCGCGAGTAGG
LOC_Os04g46420
OsAffx.26484.1.S1_at--1137--8351Chr04:27306862..27306886 (25 bp)
GGCGGATTCGCCTGAGAGTGGGAAC
LOC_Os04g46420
OsAffx.26484.1.S1_at--182--7471Chr04:27306879..27306903 (25 bp)
GTGGGAACGGGCACTGGATCCACCC
LOC_Os04g46420
OsAffx.26484.1.S1_at--312--1791Chr04:27306918..27306942 (25 bp)
ACCGACAGATCCTTGCACACCAAGG
LOC_Os04g46420
Target Sequence 
AATCACTATTTCTGTATGCGGGTACTTAAGTCGCTTGAAGCTGCCCATGGATCCTCGCGAGTAGGGGCGGAGAGGCTGGC
GGATTCGCCTGAGAGTGGGAACGGGCACTGGATCCACCCCTCCCGTCACCACCACCGACAGATCCTTGCACACCAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26484.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis