Browse Element(s) Details


OsAffx.26494.1.S1_at

Description tigr:9632.m04520
TID=OsAffx.26494.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4687011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46830OsAffx.26492.1.S1_at11/114+27534287..27535141Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os04g46830OsAffx.26492.1.S1_s_at11/114+27534287..27535141Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os04g46840OsAffx.4109.1.S1_at11/114+27536212..27537433hypothetical protein
LOC_Os04g46850OsAffx.26493.1.S1_at11/114+27540099..27540606hypothetical protein
LOC_Os04g46860Os.20826.1.S1_at11/114+27545574..27548230GRAS family transcription factor containing protein, expressed
LOC_Os04g46870OsAffx.26494.1.S1_at11/114+27552933..27554218hypothetical protein
LOC_Os04g46880Os.17299.1.S1_at10/114+27564420..27568042Glycerol 3-phosphate permease, putative, expressed
LOC_Os04g46880Os.6231.1.S1_at1/114+27564420..27568042Glycerol 3-phosphate permease, putative, expressed
LOC_Os04g46890Os.5991.1.S1_at11/114+27572799..27576762snoRNA binding domain containing protein, putative, expressed
LOC_Os04g46900OsAffx.14303.1.S1_at11/114+27576761..27596813Beige/BEACH domain containing protein, expressed
LOC_Os04g46900Os.53858.1.S1_x_at11/114+27576761..27596813Beige/BEACH domain containing protein, expressed
LOC_Os04g46900Os.14811.1.S1_at11/114+27576761..27596813Beige/BEACH domain containing protein, expressed
LOC_Os04g46900OsAffx.14303.1.S1_x_at10/114+27576761..27596813Beige/BEACH domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26494.1.S1_at--92--8251Chr04:27553904..27554106 (25 bp)
GGCATGGGTACCAGGTGTCAAGTAT
LOC_Os04g46870
OsAffx.26494.1.S1_at--994--3591Chr04:27553899..27553923 (25 bp)
GGGTACCAGGTGTCAAGTATTAGCC
LOC_Os04g46870
OsAffx.26494.1.S1_at--1129--4311Chr04:27553894..27553918 (25 bp)
CCAGGTGTCAAGTATTAGCCGGTAC
LOC_Os04g46870
OsAffx.26494.1.S1_at--512--8711Chr04:27553889..27553913 (25 bp)
TGTCAAGTATTAGCCGGTACCAGGG
LOC_Os04g46870
OsAffx.26494.1.S1_at--738--9931Chr04:27553864..27553888 (25 bp)
TACCAGGTACTGGTACCTACCGATA
LOC_Os04g46870
OsAffx.26494.1.S1_at--616--3471Chr04:27553861..27553885 (25 bp)
CAGGTACTGGTACCTACCGATACCA
LOC_Os04g46870
OsAffx.26494.1.S1_at--5--9931Chr04:27553857..27553881 (25 bp)
TACTGGTACCTACCGATACCAGGGT
LOC_Os04g46870
OsAffx.26494.1.S1_at--1051--9931Chr04:27553851..27553875 (25 bp)
TACCTACCGATACCAGGGTACAGGT
LOC_Os04g46870
OsAffx.26494.1.S1_at--153--1772Chr04:27553846..27553870 (25 bp)
ACCGATACCAGGGTACAGGTACCAG
LOC_Os04g46870
OsAffx.26494.1.S1_at--478--9971Chr04:27553846..27553865 (20 bp)
TACCAGGGTACAGGTACCAGAGGGA
LOC_Os04g46870
OsAffx.26494.1.S1_at--883--3731Chr04:27552986..27553010 (25 bp)
CTCAAGGAGGTGGATCTAGCGTGGA
LOC_Os04g46870
Target Sequence 
GGCATGGGTACCAGGTGTCAAGTATTAGCCGGTACCAGGGTACCAGGTACTGGTACCTACCGATACCAGGGTACAGGTAC
CAGAGGGAAACTAAACATGGCCTCAAGGAGGTGGATCTAGCGTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26494.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis