Browse Element(s) Details


OsAffx.26536.1.S1_at

Description tigr:9632.m04777
TID=OsAffx.26536.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=DNA-binding protein RAV2, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4923011/11B3 DNA binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g49220OsAffx.10905.1.S1_at11/114+29129690..29135033Tim10/DDP family zinc finger containing protein
LOC_Os04g49220Os.13772.1.S1_at9/114+29129690..29135033Tim10/DDP family zinc finger containing protein
LOC_Os04g49230OsAffx.26536.1.S1_at11/114+29147940..29148821B3 DNA binding domain containing protein
LOC_Os04g49240OsAffx.4127.1.S1_at11/114+29166710..29167220expressed protein
LOC_Os04g49250Os.54071.1.S1_at11/114+29172031..29173632UDP-glucose/GDP-mannose dehydrogenase family, central domain containing protein, expressed
LOC_Os04g49250OsAffx.17756.1.S1_x_at1/114+29172031..29173632UDP-glucose/GDP-mannose dehydrogenase family, central domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26536.1.S1_at--512--2591Chr04:29148440..29148464 (25 bp)
AACGAGAAGGGCCTTCTCCTCAGCT
LOC_Os04g49230
OsAffx.26536.1.S1_at--83--1091Chr04:29148433..29148457 (25 bp)
AGGGCCTTCTCCTCAGCTTCGAGGA
LOC_Os04g49230
OsAffx.26536.1.S1_at--192--3391Chr04:29148420..29148444 (25 bp)
CAGCTTCGAGGACCGAACCGGCAAG
LOC_Os04g49230
OsAffx.26536.1.S1_at--910--10611Chr04:29148416..29148440 (25 bp)
TTCGAGGACCGAACCGGCAAGCTAT
LOC_Os04g49230
OsAffx.26536.1.S1_at--998--5792Chr06:1522089..1522118 (23 bp)
GACCGAACCGGCAAGCTATGGCGCT
NONE
OsAffx.26536.1.S1_at--1006--5431Chr04:29148406..29148430 (25 bp)
GAACCGGCAAGCTATGGCGCTTCCG
LOC_Os04g49230
OsAffx.26536.1.S1_at--577--5931Chr04:29148102..29148126 (25 bp)
GAGCATCACCGCTTTCGCCAGGGCT
LOC_Os04g49230
OsAffx.26536.1.S1_at--510--1791Chr04:29148095..29148119 (25 bp)
ACCGCTTTCGCCAGGGCTTCGACTT
LOC_Os04g49230
OsAffx.26536.1.S1_at--736--1071Chr04:29148083..29148107 (25 bp)
AGGGCTTCGACTTCCGCAACATCAA
LOC_Os04g49230
OsAffx.26536.1.S1_at--196--3931Chr04:29148047..29148071 (25 bp)
CGGCGAGGCAGCTCGTCTTCTTCGG
LOC_Os04g49230
OsAffx.26536.1.S1_at--270--4351Chr04:29148018..29148042 (25 bp)
CCAGGGACGGGGATTCATCAGCACC
LOC_Os04g49230
Target Sequence 
AACGAGAAGGGCCTTCTCCTCAGCTTCGAGGACCGAACCGGCAAGCTATGGCGCTTCCGCTACTCCTACTGGAACAGCAG
CCAGAGCTACGTCATGACCAAGGGTTGGAGCCGCTTCGTCAAGGAGAAGCGCCTCGACGCCGGGGACACCGTCTCCTTCT
GCCGCGGCGCCGCCGAGGCCACCCGCGACCGCCTCTTCATCGACTGGAAGCGCCGCGCCGACGTCCGCGACCCGCACCGC
TTCCAGCGCCTACCGCTCCCCATGACCTCGCCCTACGGCCCGTGGGGCGGCGGCGCGGGCGCTTCTTCATGCCGCCCGCG
CCGCCCGCCACGCTCTACGAGCATCACCGCTTTCGCCAGGGCTTCGACTTCCGCAACATCAACCCCGCTGTGCCGGCGAG
GCAGCTCGTCTTCTTCGGCTCCCCAGGGACGGGGATTCATCAGCACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26536.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis