Browse Element(s) Details


OsAffx.26555.1.S1_at

Description tigr:9632.m04912
TID=OsAffx.26555.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5090011/11hypothetical protein
LOC_Os12g363903/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g50870Os.780.1.S1_a_at11/114+29866386..29874370Elongation factor Tu C-terminal domain containing protein, expressed
LOC_Os04g50870Os.53256.1.S1_at10/114+29866386..29874370Elongation factor Tu C-terminal domain containing protein, expressed
LOC_Os04g50870Os.7070.1.S1_at8/114+29866386..29874370Elongation factor Tu C-terminal domain containing protein, expressed
LOC_Os04g50880OsAffx.14360.1.S1_at11/114+29886700..29889804Phosphoribulokinase, chloroplast precursor, putative, expressed
LOC_Os04g50890Os.8400.1.S1_at11/114+29890895..29894578secretory carrier membrane protein, putative, expressed
LOC_Os04g50900OsAffx.26555.1.S1_at11/114+29896282..29896741hypothetical protein
LOC_Os04g50910OsAffx.28971.2.S1_x_at11/114+29900089..29900652hypothetical protein
LOC_Os04g50920Os.49750.1.S1_at7/114+29913406..29917192WRKY DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26555.1.S1_at--581--8271Chr04:29896672..29896696 (25 bp)
GGCATCGGTGCTATCTTGCGGAACA
LOC_Os04g50900
OsAffx.26555.1.S1_at--361--211Chr04:29896631..29896655 (25 bp)
ATTTGCAGTCTATGGCTTTGTTGAG
LOC_Os04g50900
OsAffx.26555.1.S1_at--546--10791Chr04:29896614..29896638 (25 bp)
TTGTTGAGCAGAGCCAGAGTGCGCT
LOC_Os04g50900
OsAffx.26555.1.S1_at--666--5311Chr04:29896564..29896588 (25 bp)
GAAGGTATCAGACTGGCTCTCCAAT
LOC_Os04g50900
OsAffx.26555.1.S1_at--32--2972Chr12:22247595..22247619 (25 bp)
AATGGACCCTTCTACCGATTATCAT
LOC_Os12g36390
OsAffx.26555.1.S1_at--197--72Chr12:22247618..22247641 (24 bp)
ATTGAATCTGACTGTGCGGAGGCGA
LOC_Os12g36390
OsAffx.26555.1.S1_at--576--9131Chr04:29896505..29896529 (25 bp)
TGCGGAGGCGATACAGATGATTCTT
LOC_Os04g50900
OsAffx.26555.1.S1_at--563--112Chr12:22247651..22247675 (25 bp)
ATTCTTTCTGAAGGGAAGCTGCGAT
LOC_Os12g36390
OsAffx.26555.1.S1_at--681--4711Chr04:29896469..29896493 (25 bp)
GCTGCGATCGGCACATACGTTTTTA
LOC_Os04g50900
OsAffx.26555.1.S1_at--574--8971Chr04:29896454..29896478 (25 bp)
TACGTTTTTAGTCAGGGAGATCCAA
LOC_Os04g50900
OsAffx.26555.1.S1_at--481--5491Chr04:29896388..29896412 (25 bp)
GAACAGGAACTGCAATCGCATCAGC
LOC_Os04g50900
Target Sequence 
GGCATCGGTGCTATCTTGCGGAACAGCACTGGAGATGTAATATTTGCAGTCTATGGCTTTGTTGAGCAGAGCCAGAGTGC
GCTGGAAGCAGAAATTTTGGCTTGCAAGGAAGGTATCAGACTGGCTCTCCAATGGACCCTTCTACCGATTATCATTGAAT
CTGACTGTGCGGAGGCGATACAGATGATTCTTTCTGAAGGGAAGCTGCGATCGGCACATACGTTTTTAGTCAGGGAGATC
CAAGGCATGGTGAAGGGGGCCAGGGAGATGAAGCTGAAGAAGGTGAACAGGAACTGCAATCGCATCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26555.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis