Browse Element(s) Details


OsAffx.26632.2.S1_at

Description tigr:9632.m05491
TID=OsAffx.26632.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g301208/11retrotransposon protein, putative, unclassified
LOC_Os03g529008/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g30089NANA12+17992527..17993561NA
LOC_Os12g30100Os.24831.2.S1_at3/1112+18001372..18004989retrotransposon protein, putative, unclassified
LOC_Os12g30100Os.45977.1.S1_at1/1112+18001372..18004989retrotransposon protein, putative, unclassified
LOC_Os12g30110OsAffx.31939.1.S1_at9/1112+18008626..18010392hypothetical protein
LOC_Os12g30120OsAffx.26632.2.S1_at8/1112+18013920..18019296retrotransposon protein, putative, unclassified
LOC_Os12g30120OsAffx.26632.1.S1_x_at7/1112+18013920..18019296retrotransposon protein, putative, unclassified
LOC_Os12g30120OsAffx.26632.2.S1_x_at6/1112+18013920..18019296retrotransposon protein, putative, unclassified
LOC_Os12g30120OsAffx.26632.1.S1_at6/1112+18013920..18019296retrotransposon protein, putative, unclassified
LOC_Os12g30120Os.26869.1.A1_at4/1112+18013920..18019296retrotransposon protein, putative, unclassified
LOC_Os12g30130NANA12+18040003..18041234hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26632.2.S1_at--72--831Chr04:33368193..33368217 (25 bp)
ATGGATTTTAGCGAGGACTGTGAGA
NONE
OsAffx.26632.2.S1_at--1012--6531Chr04:33368190..33368214 (25 bp)
GATTTTAGCGAGGACTGTGAGAATA
NONE
OsAffx.26632.2.S1_at--264--4611Chr04:33368183..33368207 (25 bp)
GCGAGGACTGTGAGAATAGTCTTAA
NONE
OsAffx.26632.2.S1_at--410--7373Chr03:30288296..30288320 (25 bp)
GTGAGAATAGTCTTAAAAACACTTT
LOC_Os03g52900
OsAffx.26632.2.S1_at--698--2413Chr03:30288311..30288335 (25 bp)
AAAACACTTTAAATCCTATGGCATC
LOC_Os03g52900
OsAffx.26632.2.S1_at--994--9834Chr03:30288320..30288344 (25 bp)
TAAATCCTATGGCATCTTCTCCTAA
LOC_Os03g52900
OsAffx.26632.2.S1_at--402--3013Chr03:30288322..30288346 (25 bp)
AATCCTATGGCATCTTCTCCTAACT
LOC_Os03g52900
OsAffx.26632.2.S1_at--99--10113Chr03:30288327..30288351 (25 bp)
TATGGCATCTTCTCCTAACTCTAAG
LOC_Os03g52900
OsAffx.26632.2.S1_at--23--8513Chr03:30288329..30288353 (25 bp)
TGGCATCTTCTCCTAACTCTAAGAA
LOC_Os03g52900
OsAffx.26632.2.S1_at--977--8273Chr03:30288330..30288354 (25 bp)
GGCATCTTCTCCTAACTCTAAGAAA
LOC_Os03g52900
OsAffx.26632.2.S1_at--627--433Chr03:30288333..30288357 (25 bp)
ATCTTCTCCTAACTCTAAGAAAAAG
LOC_Os03g52900
Target Sequence 
ATGGATTTTAGCGAGGACTGTGAGAATAGTCTTAAAAACACTTTAAATCCTATGGCATCTTCTCCTAACTCTAAGAAAAA
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26632.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis