Browse Element(s) Details


OsAffx.26713.1.S1_at

Description tigr:9633.m00265
TID=OsAffx.26713.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0341011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g03380NANA5+1374390..1374740hypothetical protein
LOC_Os05g03390Os.23340.1.S1_at11/115+1375331..1380822expressed protein
LOC_Os05g03400Os.51646.1.S1_at11/115+1388150..1390874expressed protein
LOC_Os05g03410OsAffx.26713.1.S1_at11/115+1395499..1399440hypothetical protein
LOC_Os05g03420NANA5+1400168..1401940hypothetical protein
LOC_Os05g03430Os.4647.1.S1_at11/115+1404955..1416491Sumoylation ligase E3, putative, expressed
LOC_Os05g03430Os.18396.1.S1_at1/115+1404955..1416491Sumoylation ligase E3, putative, expressed
LOC_Os05g03440NANA5+1419297..1420454hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26713.1.S1_at--787--8071Chr05:1398483..1398507 (25 bp)
GGAGCATCCAGATTACAGCCAGGAA
LOC_Os05g03410
OsAffx.26713.1.S1_at--1135--551Chr05:1398443..1398467 (25 bp)
ATCCATCTTATGTGCCTACCTGAGA
LOC_Os05g03410
OsAffx.26713.1.S1_at--399--10071Chr05:1397744..1397811 (25 bp)
TAGTCGATGAGTTCTGCTCCTGGCA
LOC_Os05g03410
OsAffx.26713.1.S1_at--1057--1271Chr05:1397714..1397738 (25 bp)
AGATCATATCCGCTCTGGATCATCC
LOC_Os05g03410
OsAffx.26713.1.S1_at--421--7791Chr05:1397360..1397384 (25 bp)
GGTGCCACATACAGAGGTCCTTGAA
LOC_Os05g03410
OsAffx.26713.1.S1_at--42--10411Chr05:1397312..1397336 (25 bp)
TTTTGATTTCTGTCCCACTGGAGAA
LOC_Os05g03410
OsAffx.26713.1.S1_at--594--8351Chr05:1397185..1397306 (25 bp)
TGACGTTGGAAACATCTGCCCTTAC
LOC_Os05g03410
OsAffx.26713.1.S1_at--990--771Chr05:1397004..1397028 (25 bp)
ATGTGCCTTATCTGCTTGCTGTAAA
LOC_Os05g03410
OsAffx.26713.1.S1_at--516--6731Chr05:1396311..1396335 (25 bp)
GTTCTATAGTCCTCCTGATGCCTAA
LOC_Os05g03410
OsAffx.26713.1.S1_at--751--8851Chr05:1396296..1396320 (25 bp)
TGATGCCTAATGCTGCTTTCCGCAG
LOC_Os05g03410
OsAffx.26713.1.S1_at--1108--2411Chr05:1396256..1396280 (25 bp)
AAAACATCCTCATTTTTCACGTGCG
LOC_Os05g03410
Target Sequence 
GGAGCATCCAGATTACAGCCAGGAAGATATCTACAAAGCTATCCATCTTATGTGCCTACCTGAGATGAAGATCTTCTTGG
ATACTACTAGAGAACTTGCAAAACACACAAACAATCTAGTCGATGAGTTCTGCTCCTGGCAGCTCAAGATCATATCCGCT
CTGGATCATCCTGCAGAAAAGTTGGTGGTGCCACATACAGAGGTCCTTGAACATGTTTCATTGATCCTAAAGGGTTTTGA
TTTCTGTCCCACTGGAGAAGGCATTGACGTTGGAAACATCTGCCCTTACACATTACCGATGCCCAACAAGGAGAAAATGA
ACCTATTTAATTTATCATGGAAAACAGGGAGCTCGGTTGCAAGCAAGGCAACTACAGATGTGCCTTATCTGCTTGCTGTA
AAGAAAAAGATTCCTTCGATGAAGCGAAAAGGTTGGGGAGGTTCTATAGTCCTCCTGATGCCTAATGCTGCTTTCCGCAG
CAAGAGAAAGATATCAAAACATCCTCATTTTTCACGTGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26713.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis