Browse Element(s) Details


OsAffx.26820.1.S1_at

Description tigr:9633.m00949
TID=OsAffx.26820.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1086010/11hypothetical protein
LOC_Os12g398601/11Adenine phosphoribosyltransferase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g10840Os.31977.1.S1_at11/115+5976088..5979913calmodulin-binding family protein, putative, expressed
LOC_Os05g10850OsAffx.26819.1.S1_at11/115+5989032..5989543hypothetical protein
LOC_Os05g10860OsAffx.26820.1.S1_at10/115+5994345..5996370hypothetical protein
LOC_Os05g10870NANA5+5999516..6005529retrotransposon protein, putative, unclassified
LOC_Os05g10880Os.31312.1.S1_at1/115+6005985..6006612retrotransposon protein, putative, unclassified
LOC_Os05g10890NANA5+6013510..6018549retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006168biological_processadenine salvage
GO:0005829cellular_componentcytosol
GO:0003999molecular_functionadenine phosphoribosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26820.1.S1_at--761--3711Chr05:5995245..5995269 (25 bp)
CTAGAAAGGGCGTTACTCCAAATAT
LOC_Os05g10860
OsAffx.26820.1.S1_at--469--9831Chr05:5995701..5995725 (25 bp)
TAAACTGAACGTACTGAGCTATGCA
LOC_Os05g10860
OsAffx.26820.1.S1_at--907--5911Chr05:5995716..5995740 (25 bp)
GAGCTATGCAGTTCCAGCAGTATGC
LOC_Os05g10860
OsAffx.26820.1.S1_at--1060--1511NONE
AGCAGTATGCAAGTACTTCCTCTCC
NONE
OsAffx.26820.1.S1_at--371--3271Chr05:5996142..5996166 (25 bp)
CAACTTCGACAATCTCCTTTTCTTC
LOC_Os05g10860
OsAffx.26820.1.S1_at--869--3651Chr05:5996158..5996182 (25 bp)
CTTTTCTTCCCTGACGCTAATGATA
LOC_Os05g10860
OsAffx.26820.1.S1_at--69--5791Chr05:5996170..5996194 (25 bp)
GACGCTAATGATAACCCAAACTTTG
LOC_Os05g10860
OsAffx.26820.1.S1_at--21--4172Chr05:5996184..5996208 (25 bp)
CCCAAACTTTGACGAAGGACTTATG
LOC_Os05g10860
OsAffx.26820.1.S1_at--318--2911Chr05:5996198..5996222 (25 bp)
AAGGACTTATGAATTGGCGTTCTAG
LOC_Os05g10860
OsAffx.26820.1.S1_at--382--1471Chr05:5996267..5996291 (25 bp)
AGAAGGTCACTGAGCTTAGAGGGAT
LOC_Os05g10860
OsAffx.26820.1.S1_at--288--3653Chr05:5996281..5996305 (25 bp)
CTTAGAGGGATGGTCGTGGAATACC
LOC_Os05g10860
Target Sequence 
CTAGAAAGGGCGTTACTCCAAATATAAAACGACAGCTTATTAAACTGAACGTACTGAGCTATGCAGTTCCAGCAGTATGC
AAGTACTTCCTCTCCAACTTCGACAATCTCCTTTTCTTCCCTGACGCTAATGATAACCCAAACTTTGACGAAGGACTTAT
GAATTGGCGTTCTAGGTTGGGGTTAAGGCGGGGTAGGAGGGGTGTGAGAGGAGGGGGAAAGAAGGTCACTGAGCTTAGAG
GGATGGTCGTGGAATACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26820.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis