Browse Element(s) Details


OsAffx.26847.1.S1_x_at

Description tigr:9633.m01078
TID=OsAffx.26847.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1211011/11hypothetical protein
LOC_Os03g313701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g12070NANA5+6883419..6883667retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g12080NANA5+6895481..6895831hypothetical protein
LOC_Os05g12090OsAffx.26845.1.S1_at11/115+6899083..6899367VQ motif family protein, expressed
LOC_Os05g12100OsAffx.26846.1.S1_at11/115+6902221..6902990expressed protein
LOC_Os05g12110OsAffx.26847.1.S1_at11/115+6905080..6905547hypothetical protein
LOC_Os05g12110OsAffx.26847.1.S1_x_at11/115+6905080..6905547hypothetical protein
LOC_Os05g12120OsAffx.26848.1.S1_at11/115+6907031..6907465hypothetical protein
LOC_Os05g12130Os.52479.1.S1_at11/115+6913172..6915906pentatricopeptide, putative, expressed
LOC_Os05g12140Os.8464.1.A1_at11/115+6916203..6919012Leucine Rich Repeat family protein, expressed
LOC_Os05g12150Os.51700.1.S1_at11/115+6921210..6923907Glycosyl hydrolase family 9 protein, expressed
LOC_Os05g12150Os.32667.2.S1_x_at1/115+6921210..6923907Glycosyl hydrolase family 9 protein, expressed
LOC_Os05g12160OsAffx.4310.1.S1_at11/115+6928117..6928627hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26847.1.S1_x_at--126--911Chr05:6905182..6905206 (25 bp)
AGGCTGCACTAGTAGTAGGGCTAGT
LOC_Os05g12110
OsAffx.26847.1.S1_x_at--1098--10051Chr05:6905173..6905197 (25 bp)
TAGTAGTAGGGCTAGTATCACTTCT
LOC_Os05g12110
OsAffx.26847.1.S1_x_at--425--1191Chr05:6905172..6905196 (25 bp)
AGTAGTAGGGCTAGTATCACTTCTA
LOC_Os05g12110
OsAffx.26847.1.S1_x_at--639--10051Chr05:6905170..6905194 (25 bp)
TAGTAGGGCTAGTATCACTTCTAGG
LOC_Os05g12110
OsAffx.26847.1.S1_x_at--784--6911Chr05:6905168..6905192 (25 bp)
GTAGGGCTAGTATCACTTCTAGGGT
LOC_Os05g12110
OsAffx.26847.1.S1_x_at--469--1074Chr03:21841105..21841124 (20 bp)
AGGGCTAGTATCACTTCTAGGGTTT
NONE
OsAffx.26847.1.S1_x_at--174--7591Chr05:6905165..6905189 (25 bp)
GGGCTAGTATCACTTCTAGGGTTTA
LOC_Os05g12110
OsAffx.26847.1.S1_x_at--603--8291Chr05:6905164..6905188 (25 bp)
GGCTAGTATCACTTCTAGGGTTTAT
LOC_Os05g12110
OsAffx.26847.1.S1_x_at--1097--4851Chr05:6905163..6905187 (25 bp)
GCTAGTATCACTTCTAGGGTTTATT
LOC_Os05g12110
OsAffx.26847.1.S1_x_at--349--10053Chr03:21841105..21841604 (25 bp)
TAGTATCACTTCTAGGGTTTATTTT
NONE
OsAffx.26847.1.S1_x_at--544--10336Chr05:18283467..18283491 (25 bp)
TTTAGTGGGCTTATTGGGCTTCCTA
NONE
Target Sequence 
AGGCTGCACTAGTAGTAGGGCTAGTATCACTTCTAGGGTTTATTTTAGTGGGCTTATTGGGCTTCCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26847.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis