Browse Element(s) Details


OsAffx.26852.1.S1_at

Description tigr:9633.m01092
TID=OsAffx.26852.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1225011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g12200OsAffx.14655.1.S1_at10/115+6966368..6967765TNP2, putative
LOC_Os05g12200OsAffx.3348.1.S1_at1/115+6966368..6967765TNP2, putative
LOC_Os05g12210OsAffx.26850.1.S1_x_at11/115+6970651..6972977Chalcone synthase 8, putative, expressed
LOC_Os05g12220OsAffx.4311.1.S1_at11/115+6976937..6977346hypothetical protein
LOC_Os05g12230OsAffx.26851.1.S1_at10/115+6979252..6981442hypothetical protein
LOC_Os05g12240OsAffx.26850.1.S1_x_at11/115+6983383..6984769Chalcone synthase 8, putative
LOC_Os05g12240Os.36437.1.S1_at1/115+6983383..6984769Chalcone synthase 8, putative
LOC_Os05g12250OsAffx.26852.1.S1_at11/115+6991999..6992671hypothetical protein
LOC_Os05g12260Os.5395.1.S1_at11/115+7013604..7015898CAPIP1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26852.1.S1_at--524--1091Chr05:6992230..6992254 (25 bp)
AGGGCCAGAGGCAGTCGTTCTCCAT
LOC_Os05g12250
OsAffx.26852.1.S1_at--958--6191Chr05:6992223..6992247 (25 bp)
GAGGCAGTCGTTCTCCATGCACTGG
LOC_Os05g12250
OsAffx.26852.1.S1_at--851--651Chr05:6992207..6992231 (25 bp)
ATGCACTGGCAGTAGGAGGTCCCCG
LOC_Os05g12250
OsAffx.26852.1.S1_at--228--8271Chr05:6992200..6992224 (25 bp)
GGCAGTAGGAGGTCCCCGAGCCATT
LOC_Os05g12250
OsAffx.26852.1.S1_at--777--5851Chr05:6992183..6992207 (25 bp)
GAGCCATTGCCGTCATGTCCGACTA
LOC_Os05g12250
OsAffx.26852.1.S1_at--634--7231Chr05:6992167..6992191 (25 bp)
GTCCGACTACCGCAAATGCCGCAGG
LOC_Os05g12250
OsAffx.26852.1.S1_at--1132--591Chr05:6992152..6992176 (25 bp)
ATGCCGCAGGGCTGCAGCCAGTCGC
LOC_Os05g12250
OsAffx.26852.1.S1_at--359--8371Chr05:6992121..6992145 (25 bp)
GGCGTGGTGACCAAATCAGCGGTAA
LOC_Os05g12250
OsAffx.26852.1.S1_at--653--6051Chr05:6992059..6992083 (25 bp)
GAGTTCGCCGTGGACCAGTGCTGCT
LOC_Os05g12250
OsAffx.26852.1.S1_at--752--3991Chr05:6992051..6992075 (25 bp)
CGTGGACCAGTGCTGCTGCTGTCTC
LOC_Os05g12250
OsAffx.26852.1.S1_at--571--9111Chr05:6992035..6992059 (25 bp)
TGCTGTCTCCTCCTACGAACGGGCT
LOC_Os05g12250
Target Sequence 
AGGGCCAGAGGCAGTCGTTCTCCATGCACTGGCAGTAGGAGGTCCCCGAGCCATTGCCGTCATGTCCGACTACCGCAAAT
GCCGCAGGGCTGCAGCCAGTCGCCTTGCCGGCGTGGTGACCAAATCAGCGGTAAAAGCTGTGGCAGAAGAGGATCGACGG
GAGAAGAAGAGGAGTTCGCCGTGGACCAGTGCTGCTGCTGTCTCCTCCTACGAACGGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26852.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis