Browse Element(s) Details


OsAffx.26859.1.S1_at

Description tigr:9633.m01122
TID=OsAffx.26859.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1257011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g12510OsAffx.26857.1.S1_at11/115+7172070..7174357hypothetical protein
LOC_Os05g12524NANA5+7176206..7176920NA
LOC_Os05g12540OsAffx.26858.1.S1_at11/115+7178367..7178738hypothetical protein
LOC_Os05g12540OsAffx.17095.1.S1_at1/115+7178367..7178738hypothetical protein
LOC_Os05g12550OsAffx.4315.1.S1_at11/115+7179441..7182024expressed protein
LOC_Os05g12550Os.53111.1.S1_at1/115+7179441..7182024expressed protein
LOC_Os05g12560OsAffx.28800.1.S1_x_at11/115+7186965..7189124hypothetical protein
LOC_Os05g12570OsAffx.26859.1.S1_at11/115+7191042..7196018NB-ARC domain containing protein, expressed
LOC_Os05g12580Os.11520.1.S1_at1/115+7198872..7199210hypothetical protein
LOC_Os05g12590OsAffx.14663.1.S1_at11/115+7207573..7207959hypothetical protein
LOC_Os05g12590OsAffx.13464.1.S1_at3/115+7207573..7207959hypothetical protein
LOC_Os05g12600OsAffx.14664.1.S1_at11/115+7211239..7212524hypothetical protein
LOC_Os05g12610NANA5+7218180..7219734retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0005622cellular_componentintracellular
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26859.1.S1_at--911--8491Chr05:7195666..7195690 (25 bp)
TGGCAGTGCGACATGACAAGGCTTT
LOC_Os05g12570
OsAffx.26859.1.S1_at--2--2231Chr05:7195681..7195705 (25 bp)
ACAAGGCTTTGCTGGCTTGGAGACG
LOC_Os05g12570
OsAffx.26859.1.S1_at--920--3451Chr05:7195789..7195813 (25 bp)
CAGTGATGCCCATGCGCTGGCGGAA
LOC_Os05g12570
OsAffx.26859.1.S1_at--233--9171Chr05:7195795..7195819 (25 bp)
TGCCCATGCGCTGGCGGAAGTTTAG
LOC_Os05g12570
OsAffx.26859.1.S1_at--892--2972Chr05:7195833..7195857 (25 bp)
AATGGTGCATCAGTGGTAGATCGGC
LOC_Os05g12570
OsAffx.26859.1.S1_at--70--3931Chr05:7195888..7195912 (25 bp)
CGGCCTTGGCCGGATCAGCAACGAT
LOC_Os05g12570
OsAffx.26859.1.S1_at--284--8431Chr05:7195895..7195919 (25 bp)
GGCCGGATCAGCAACGATGGCGTTC
LOC_Os05g12570
OsAffx.26859.1.S1_at--576--2591Chr05:7195907..7195931 (25 bp)
AACGATGGCGTTCAAGCGTCACTCC
LOC_Os05g12570
OsAffx.26859.1.S1_at--1048--3851Chr05:7195936..7195960 (25 bp)
CTGAGGGCGTTGTCGGGCCATCTCA
LOC_Os05g12570
OsAffx.26859.1.S1_at--213--3551Chr05:7195954..7195978 (25 bp)
CATCTCAACCCCTCAAGTGTGGCTG
LOC_Os05g12570
OsAffx.26859.1.S1_at--966--4291Chr05:7195964..7195988 (25 bp)
CCTCAAGTGTGGCTGCCAGGTGAAA
LOC_Os05g12570
Target Sequence 
TGGCAGTGCGACATGACAAGGCTTTGCTGGCTTGGAGACGGTGGCCGGCGCAGCGAGAGGAGAGGCCGGTGGAGGTGCAA
CCGGTGGCAGTGCGCGGAGATTGGCCGGTGGGGGGCACCGGTGCAGTGATGCCCATGCGCTGGCGGAAGTTTAGATGGCG
GTGGAGCAATGGTGCATCAGTGGTAGATCGGCAGGCGGTGGACGGCGGGCGAAAACCCAGCCCGGCCTTGGCCGGATCAG
CAACGATGGCGTTCAAGCGTCACTCCCCTCCTGAGGGCGTTGTCGGGCCATCTCAACCCCTCAAGTGTGGCTGCCAGGTG
AAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26859.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis