Browse Element(s) Details


OsAffx.26878.1.S1_at

Description tigr:9633.m01241
TID=OsAffx.26878.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1422011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g14180Os.11876.1.S1_s_at11/115+7930186..7933694Auxin-responsive protein IAA9, putative, expressed
LOC_Os05g14194Os.22487.1.S1_at11/115+7939353..7946068Lactoylglutathione lyase, putative, expressed
LOC_Os05g14194OsAffx.4331.1.S1_at10/115+7939353..7946068Lactoylglutathione lyase, putative, expressed
LOC_Os05g14210OsAffx.14684.1.S1_at11/115+7947180..7947746hypothetical protein
LOC_Os05g14220OsAffx.26878.1.S1_at11/115+7952449..7955131Protein kinase domain containing protein
LOC_Os05g14220Os.4820.1.S1_at1/115+7952449..7955131Protein kinase domain containing protein
LOC_Os05g14230NANA5+7960254..7960508hypothetical protein
LOC_Os05g14240Os.37723.1.S1_at11/115+7980002..7982306Aquaporin TIP3.1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26878.1.S1_at--186--9791Chr05:7952977..7953001 (25 bp)
TAAGATAGCACTTGGCATGGCCTCA
LOC_Os05g14220
OsAffx.26878.1.S1_at--565--4451Chr05:7952958..7952982 (25 bp)
GCCTCAGCTCTCAACTATATGCATG
LOC_Os05g14220
OsAffx.26878.1.S1_at--178--271Chr05:7952942..7952966 (25 bp)
ATATGCATGGGAATCATCCGCGCGT
LOC_Os05g14220
OsAffx.26878.1.S1_at--752--7751Chr05:7952842..7952866 (25 bp)
GGTGAGGCAAGTCCCCATTGACAAA
LOC_Os05g14220
OsAffx.26878.1.S1_at--866--8951Chr05:7952824..7952848 (25 bp)
TGACAAAACTTCTTGCCCAATGACC
LOC_Os05g14220
OsAffx.26878.1.S1_at--987--1491Chr05:7952760..7952784 (25 bp)
AGCACAGGCTGTATCAGTCCGGCGT
LOC_Os05g14220
OsAffx.26878.1.S1_at--470--7231Chr05:7952744..7952768 (25 bp)
GTCCGGCGTCTGATATTTACGGCTT
LOC_Os05g14220
OsAffx.26878.1.S1_at--692--4911Chr05:7952710..7952734 (25 bp)
GCTTCTGGAGATTGCTTCCGGTGAA
LOC_Os05g14220
OsAffx.26878.1.S1_at--293--6391Chr05:7952604..7952628 (25 bp)
GATCGACGCCTAAACGGTGACTTTG
LOC_Os05g14220
OsAffx.26878.1.S1_at--181--8791Chr05:7952560..7952584 (25 bp)
TGTTATACTCATTGGGCTTCTCTGC
LOC_Os05g14220
OsAffx.26878.1.S1_at--345--1471Chr05:7952482..7952506 (25 bp)
AGAAGGTCAGCTACCAGTGCCTCAA
LOC_Os05g14220
Target Sequence 
TAAGATAGCACTTGGCATGGCCTCAGCTCTCAACTATATGCATGGGAATCATCCGCGCGTCCTGCACAGGGATATTAAGC
CTGGCAACGTGATGCTAGATGAAGAATTCAATGCTAAAGTTGGTGACTTTGGGCTGGTGAGGCAAGTCCCCATTGACAAA
ACTTCTTGCCCAATGACCATATTTGGGTCTTCAAGATATATAGACCCTCAATATTGTAGCACAGGCTGTATCAGTCCGGC
GTCTGATATTTACGGCTTCGGTGTGGTGCTTCTGGAGATTGCTTCCGGTGAAATACCTCAGTGTCTCAAGGGTAATGGTC
TCGTTGAGAAGTTTAGGAGATTGTATTACAGCAATTCACTGCTTGATGCAGTCGATCGACGCCTAAACGGTGACTTTGAT
GAGGAGCAGATGAAACGTGTTATACTCATTGGGCTTCTCTGCGTCCAATTCGATCGTCACATGCGGCCATCAAGTAAGGA
AGTTTTGGGCTATTTAGAAGGTCAGCTACCAGTGCCTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26878.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis