Browse Element(s) Details


OsAffx.26905.1.S1_at

Description tigr:9633.m01351
TID=OsAffx.26905.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1531011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g15260OsAffx.4344.1.S1_at11/115+8634354..8635570hypothetical protein
LOC_Os05g15270Os.36426.1.S1_at1/115+8635965..8642312retrotransposon protein, putative, unclassified
LOC_Os05g15270OsAffx.199.1.S1_at1/115+8635965..8642312retrotransposon protein, putative, unclassified
LOC_Os05g15280OsAffx.20877.1.S1_at1/115+8644822..8647071retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15280Os.48015.1.A1_x_at1/115+8644822..8647071retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15280OsAffx.10665.2.S1_at1/115+8644822..8647071retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15290NANA5+8649347..8651906retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15300Os.55077.1.S1_at11/115+8655868..8658571expressed protein
LOC_Os05g15310OsAffx.26905.1.S1_at11/115+8658997..8659323hypothetical protein
LOC_Os05g15320NANA5+8659936..8663086transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g15330OsAffx.26906.1.S1_at10/115+8663358..8664316hypothetical protein
LOC_Os05g15340NANA5+8666397..8667505retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g15350OsAffx.14706.1.S1_at11/115+8668015..8669655hypothetical protein
LOC_Os05g15350OsAffx.14659.1.S1_at2/115+8668015..8669655hypothetical protein
LOC_Os05g15360Os.27007.1.A1_at11/115+8671073..8675764expressed protein
LOC_Os05g15360Os.20186.1.S1_at11/115+8671073..8675764expressed protein
LOC_Os05g15360Os.49286.1.S1_x_at10/115+8671073..8675764expressed protein
LOC_Os05g15360Os.24955.1.A1_x_at1/115+8671073..8675764expressed protein
LOC_Os05g15370Os.27007.1.A1_at3/115+8676822..8683310ribosomal protein L13 containing protein, expressed
LOC_Os05g15370Os.49286.1.S1_x_at2/115+8676822..8683310ribosomal protein L13 containing protein, expressed
LOC_Os05g15370Os.9815.1.S1_at2/115+8676822..8683310ribosomal protein L13 containing protein, expressed
LOC_Os05g15370Os.24955.1.A1_x_at1/115+8676822..8683310ribosomal protein L13 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26905.1.S1_at--53--611Chr05:8659229..8659253 (25 bp)
ATGCCCCGCCACAGTCAGTTGTTGG
LOC_Os05g15310
OsAffx.26905.1.S1_at--1054--8811Chr05:8659210..8659234 (25 bp)
TGTTGGCGATGAAACTCTAGAGTGG
LOC_Os05g15310
OsAffx.26905.1.S1_at--640--2391Chr05:8659199..8659223 (25 bp)
AAACTCTAGAGTGGACTGGTGCAGC
LOC_Os05g15310
OsAffx.26905.1.S1_at--76--1331Chr05:8659192..8659216 (25 bp)
AGAGTGGACTGGTGCAGCTCCTACC
LOC_Os05g15310
OsAffx.26905.1.S1_at--586--5731Chr05:8659186..8659210 (25 bp)
GACTGGTGCAGCTCCTACCCAGGTA
LOC_Os05g15310
OsAffx.26905.1.S1_at--779--7851Chr05:8659165..8659189 (25 bp)
GGTATACCCCGTCCAGGAAGACAAG
LOC_Os05g15310
OsAffx.26905.1.S1_at--99--991Chr05:8659105..8659129 (25 bp)
AGGAGTTGCTAGAACCTCACGCTAC
LOC_Os05g15310
OsAffx.26905.1.S1_at--135--1451Chr05:8659095..8659119 (25 bp)
AGAACCTCACGCTACAGTGCTCCGT
LOC_Os05g15310
OsAffx.26905.1.S1_at--109--4691Chr05:8659056..8659080 (25 bp)
GCGGAGAGCTCAAACTCGTTGATTG
LOC_Os05g15310
OsAffx.26905.1.S1_at--164--2011Chr05:8659043..8659067 (25 bp)
ACTCGTTGATTGAGATGTGGACCAA
LOC_Os05g15310
OsAffx.26905.1.S1_at--274--7491Chr05:8659027..8659051 (25 bp)
GTGGACCAAACCTAGCGTCCAAGTT
LOC_Os05g15310
Target Sequence 
ATGCCCCGCCACAGTCAGTTGTTGGCGATGAAACTCTAGAGTGGACTGGTGCAGCTCCTACCCAGGTATACCCCGTCCAG
GAAGACAAGGGCGAGGGGAGAAAGAAAAAGGGCAAGGCGGCGAGAGGAGTTGCTAGAACCTCACGCTACAGTGCTCCGTC
GACCTCGGCTCCGGCGGAGAGCTCAAACTCGTTGATTGAGATGTGGACCAAACCTAGCGTCCAAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26905.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis