Browse Element(s) Details


OsAffx.26924.3.S1_x_at

Description tigr:9633.m01475
TID=OsAffx.26924.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1652011/11hypothetical protein
LOC_Os05g165301/11hypothetical protein
LOC_Os05g164501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g16470NANA5+9331454..9331816hypothetical protein
LOC_Os05g16480OsAffx.26925.1.S1_at11/115+9332094..9334856hypothetical protein
LOC_Os05g16480OsAffx.26926.1.S1_at1/115+9332094..9334856hypothetical protein
LOC_Os05g16490OsAffx.14731.2.S1_at11/115+9336733..9338613hypothetical protein
LOC_Os05g16500NANA5+9340123..9345034hypothetical protein
LOC_Os05g16510NANA5+9347447..9347833hypothetical protein
LOC_Os05g16520OsAffx.26924.3.S1_x_at11/115+9352367..9353812hypothetical protein
LOC_Os05g16520OsAffx.26924.1.S1_at2/115+9352367..9353812hypothetical protein
LOC_Os05g16520OsAffx.26924.1.S1_x_at2/115+9352367..9353812hypothetical protein
LOC_Os05g16520OsAffx.26924.2.S1_at1/115+9352367..9353812hypothetical protein
LOC_Os05g16530OsAffx.26924.1.S1_at11/115+9361898..9363506hypothetical protein
LOC_Os05g16530OsAffx.26924.1.S1_x_at11/115+9361898..9363506hypothetical protein
LOC_Os05g16530OsAffx.26924.3.S1_x_at1/115+9361898..9363506hypothetical protein
LOC_Os05g16530OsAffx.22211.2.S1_s_at1/115+9361898..9363506hypothetical protein
LOC_Os05g16540OsAffx.26926.1.S1_at11/115+9367494..9369049hypothetical protein
LOC_Os05g16550NANA5+9370238..9371272retrotransposon protein, putative, unclassified
LOC_Os05g16560NANA5+9371551..9373666retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g16570OsAffx.14733.1.S1_at10/115+9374613..9377617hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26924.3.S1_x_at--724--1571Chr05:9352527..9352551 (25 bp)
AGCTCAACGAGCGTCGTCACGTGGA
LOC_Os05g16520
OsAffx.26924.3.S1_x_at--679--3251Chr05:9352523..9352547 (25 bp)
CAACGAGCGTCGTCACGTGGATGTT
LOC_Os05g16520
OsAffx.26924.3.S1_x_at--808--1851Chr05:9352521..9352545 (25 bp)
ACGAGCGTCGTCACGTGGATGTTCC
LOC_Os05g16520
OsAffx.26924.3.S1_x_at--686--1631Chr05:9352518..9352542 (25 bp)
AGCGTCGTCACGTGGATGTTCCTCC
LOC_Os05g16520
OsAffx.26924.3.S1_x_at--442--1673Chr05:9320571..9320607 (25 bp)
AGCCCGAGGAGATAGAGGATCCTTT
LOC_Os05g16450
OsAffx.26924.3.S1_x_at--418--6371Chr05:9352453..9352477 (25 bp)
GATCCTTTTATTGGGTTGCCTCTAG
LOC_Os05g16520
OsAffx.26924.3.S1_x_at--1052--4291Chr05:9352450..9352474 (25 bp)
CCTTTTATTGGGTTGCCTCTAGATT
LOC_Os05g16520
OsAffx.26924.3.S1_x_at--1111--10211Chr05:9352445..9352469 (25 bp)
TATTGGGTTGCCTCTAGATTTTGAC
LOC_Os05g16520
OsAffx.26924.3.S1_x_at--813--10831Chr05:9352443..9352467 (25 bp)
TTGGGTTGCCTCTAGATTTTGACTT
LOC_Os05g16520
OsAffx.26924.3.S1_x_at--386--5692Chr05:9320630..9320903 (25 bp)
GACTTCTTTGGGTTTGGCCATGACT
NONE
OsAffx.26924.3.S1_x_at--451--7691Chr05:9352414..9352438 (25 bp)
GGGTTTGGCCATGACTATGGCTATC
LOC_Os05g16520
Target Sequence 
AGCTCAACGAGCGTCGTCACGTGGATGTTCCTCCCTCCCAACCGGGCTTTGAGGCTGAGCCCGAGGAGATAGAGGATCCT
TTTATTGGGTTGCCTCTAGATTTTGACTTCTTTGGGTTTGGCCATGACTATGGCTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26924.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis