Browse Element(s) Details


OsAffx.2698.1.S1_at

Description tigr:9630.m01967
TID=OsAffx.2698.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2055011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g20510OsAffx.2697.1.S1_at11/112+12100867..12101382hypothetical protein
LOC_Os02g20520OsAffx.12135.1.S1_x_at8/112+12103228..12105794hypothetical protein
LOC_Os02g20520OsAffx.12135.1.S1_at8/112+12103228..12105794hypothetical protein
LOC_Os02g20530OsAffx.12136.1.S1_at11/112+12106516..12110223hypothetical protein
LOC_Os02g20540Os.14430.1.S1_at11/112+12113917..12114962Fasciclin domain containing protein, expressed
LOC_Os02g20550OsAffx.2698.1.S1_at11/112+12123596..12123874hypothetical protein
LOC_Os02g20560Os.17961.1.S1_a_at11/112+12127922..12129229Fasciclin domain containing protein, expressed
LOC_Os02g20570Os.46785.2.S1_x_at4/112+12134248..12138246retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g20570OsAffx.30226.2.S1_x_at2/112+12134248..12138246retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g20570OsAffx.442.1.S1_x_at1/112+12134248..12138246retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g20579NANA2+12140042..12140245NA
LOC_Os02g20590OsAffx.24346.1.S1_x_at2/112+12143092..12144153BTB/POZ domain containing protein
LOC_Os02g20600OsAffx.24346.1.S1_at11/112+12146389..12147621BTB/POZ domain containing protein
LOC_Os02g20600OsAffx.24346.1.S1_x_at11/112+12146389..12147621BTB/POZ domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2698.1.S1_at--824--2011Chr02:12123629..12123653 (25 bp)
ACTACTTGCTGTCGATGCCCCTGCG
LOC_Os02g20550
OsAffx.2698.1.S1_at--54--2011Chr02:12123655..12123679 (25 bp)
ACTCAACCCCACGAAGGTGACAGAT
LOC_Os02g20550
OsAffx.2698.1.S1_at--1086--5311Chr02:12123667..12123691 (25 bp)
GAAGGTGACAGATGAACACGAGCAG
LOC_Os02g20550
OsAffx.2698.1.S1_at--495--4711Chr02:12123705..12123729 (25 bp)
GCGGCCTCGGAGACGCTGACATAGA
LOC_Os02g20550
OsAffx.2698.1.S1_at--142--4291Chr02:12123709..12123733 (25 bp)
CCTCGGAGACGCTGACATAGAGCAA
LOC_Os02g20550
OsAffx.2698.1.S1_at--537--8951Chr02:12123721..12123745 (25 bp)
TGACATAGAGCAAGAGGAGCCATCA
LOC_Os02g20550
OsAffx.2698.1.S1_at--734--1771Chr02:12123748..12123772 (25 bp)
ACCGGCGCGCGGAGCTACTAGCTGC
LOC_Os02g20550
OsAffx.2698.1.S1_at--865--8071Chr02:12123758..12123782 (25 bp)
GGAGCTACTAGCTGCTGGCCTCGAG
LOC_Os02g20550
OsAffx.2698.1.S1_at--210--3031Chr02:12123805..12123829 (25 bp)
AATGCCGTGGAGGACACGAGGATCA
LOC_Os02g20550
OsAffx.2698.1.S1_at--498--6191Chr02:12123814..12123838 (25 bp)
GAGGACACGAGGATCACGCCGTCGA
LOC_Os02g20550
OsAffx.2698.1.S1_at--792--2171Chr02:12123818..12123842 (25 bp)
ACACGAGGATCACGCCGTCGAGAAC
LOC_Os02g20550
Target Sequence 
ACTACTTGCTGTCGATGCCCCTGCGCACTCAACCCCACGAAGGTGACAGATGAACACGAGCAGGAGGCCGATGGCAGCGG
CCTCGGAGACGCTGACATAGAGCAAGAGGAGCCATCACCACCGGCGCGCGGAGCTACTAGCTGCTGGCCTCGAGCGCGAC
GAGGAAGTTGTACGGGAATGCCGTGGAGGACACGAGGATCACGCCGTCGAGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2698.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis