Browse Element(s) Details


OsAffx.27025.1.S1_at

Description tigr:9633.m02374
TID=OsAffx.27025.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g206701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g20650Os.46471.1.S1_at10/1110+10096322..10100533expressed protein
LOC_Os10g20660NANA10+10108177..10113353retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g20670OsAffx.27025.1.S1_at1/1110+10116880..10120351hypothetical protein
LOC_Os10g20670OsAffx.32166.1218.S1_x_at1/1110+10116880..10120351hypothetical protein
LOC_Os10g20680Os.38751.1.A1_at5/1110+10127408..10128682retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g20690OsAffx.30465.1.S1_at11/1110+10137535..10138304hypothetical protein
LOC_Os10g20690Os.54774.1.S1_x_at1/1110+10137535..10138304hypothetical protein
LOC_Os10g20700OsAffx.6711.1.S1_at11/1110+10142433..10143307hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27025.1.S1_at--147--1873Chr12:20334720..20334744 (25 bp)
ACGGGCTCGCCGGTATTTATAGGCT
NONE
OsAffx.27025.1.S1_at--947--6871Chr05:15189980..15190004 (25 bp)
GTATTTATAGGCTTCAGAGGTCAGT
NONE
OsAffx.27025.1.S1_at--331--10391Chr05:15189976..15190000 (25 bp)
TTATAGGCTTCAGAGGTCAGTTGCT
NONE
OsAffx.27025.1.S1_at--1076--10091Chr05:15189973..15189997 (25 bp)
TAGGCTTCAGAGGTCAGTTGCTCAA
NONE
OsAffx.27025.1.S1_at--780--8291Chr05:15189971..15189995 (25 bp)
GGCTTCAGAGGTCAGTTGCTCAAGT
NONE
OsAffx.27025.1.S1_at--477--9651Chr05:15189967..15189991 (25 bp)
TCAGAGGTCAGTTGCTCAAGTCGGT
NONE
OsAffx.27025.1.S1_at--343--871Chr05:15189963..15189987 (25 bp)
AGGTCAGTTGCTCAAGTCGGTTCGC
NONE
OsAffx.27025.1.S1_at--55--9651Chr05:15189960..15189984 (25 bp)
TCAGTTGCTCAAGTCGGTTCGCAGA
NONE
OsAffx.27025.1.S1_at--675--10713Chr10:10117134..10117158 (25 bp)
TTGCTCAAGTCGGTTCGCAGAGGAG
LOC_Os10g20670
OsAffx.27025.1.S1_at--378--3011Chr05:15189891..15189915 (25 bp)
AATGACGGCGCCGATTTCTTAGCGG
NONE
OsAffx.27025.1.S1_at--681--4552Chr02:24408337..24408366 (24 bp)
GCGCCGATTTCTTAGCGGCGACGTA
NONE
Target Sequence 
ACGGGCTCGCCGGTATTTATAGGCTTCAGAGGTCAGTTGCTCAAGTCGGTTCGCAGAGGAGGAGGGCGACGAAGGCACGG
CTGCGGCAACGTGAAGGAAAGAATGACGGCGCCGATTTCTTAGCGGCGACGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27025.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis