Browse Element(s) Details


OsAffx.27033.1.S1_at

Description tigr:9633.m02440
TID=OsAffx.27033.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2694011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g26902Os.15221.1.S1_a_at11/115+15539557..15544518Chaperone protein dnaJ, putative, expressed
LOC_Os05g26902Os.54610.1.S1_at8/115+15539557..15544518Chaperone protein dnaJ, putative, expressed
LOC_Os05g26914Os.15221.1.S1_a_at11/115+15548386..15554869Chaperone protein dnaJ, putative, expressed
LOC_Os05g26914Os.54610.1.S1_at9/115+15548386..15554869Chaperone protein dnaJ, putative, expressed
LOC_Os05g26926Os.15221.1.S1_a_at3/115+15557732..15560381Chaperone protein dnaJ, putative, expressed
LOC_Os05g26940OsAffx.27033.2.S1_s_at11/115+15565223..15566578Protein kinase domain containing protein
LOC_Os05g26940OsAffx.27033.1.S1_at11/115+15565223..15566578Protein kinase domain containing protein
LOC_Os05g26954Os.5882.1.S1_at11/115+15578580..15584341Saposin-like type B, region 1 family protein, expressed
LOC_Os05g26970NANA5+15588392..15593533retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0009738biological_processabscisic acid mediated signaling
GO:0009788biological_processnegative regulation of abscisic acid mediated signaling
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27033.1.S1_at--95--9171Chr05:15565777..15565801 (25 bp)
TGCGCCGCTAAGTTCCGGTGTCCAA
LOC_Os05g26940
OsAffx.27033.1.S1_at--58--9291Chr05:15565764..15565788 (25 bp)
TCCGGTGTCCAAAATGGTGCTCGCA
LOC_Os05g26940
OsAffx.27033.1.S1_at--567--3231Chr05:15565648..15565672 (25 bp)
CAAGATGGGAGTTCATCATCATTCG
LOC_Os05g26940
OsAffx.27033.1.S1_at--396--111Chr05:15565628..15565652 (25 bp)
ATTCGGTATGATCCAAGCTGCGTCC
LOC_Os05g26940
OsAffx.27033.1.S1_at--29--7871Chr05:15565624..15565648 (25 bp)
GGTATGATCCAAGCTGCGTCCTCTC
LOC_Os05g26940
OsAffx.27033.1.S1_at--113--9151Chr05:15565610..15565634 (25 bp)
TGCGTCCTCTCATTCTAAACCAGAG
LOC_Os05g26940
OsAffx.27033.1.S1_at--749--7671Chr05:15565314..15565338 (25 bp)
GGGTTAATCTATTGCCCAAGAAAAT
LOC_Os05g26940
OsAffx.27033.1.S1_at--1024--71Chr05:15565304..15565328 (25 bp)
ATTGCCCAAGAAAATACTGATGATA
LOC_Os05g26940
OsAffx.27033.1.S1_at--839--3851Chr05:15565275..15565299 (25 bp)
CTGAAAGGGTTATTGGAAGCGAGAT
LOC_Os05g26940
OsAffx.27033.1.S1_at--284--5411Chr05:15565260..15565284 (25 bp)
GAAGCGAGATTCCTAAATTTTGGCA
LOC_Os05g26940
OsAffx.27033.1.S1_at--361--6552Chr05:15565253..15565277 (25 bp)
GATTCCTAAATTTTGGCATCAACTT
LOC_Os05g26940
Target Sequence 
TGCGCCGCTAAGTTCCGGTGTCCAAAATGGTGCTCGCAGGAGCTCCGCTCCCTTATCGGGCGGATGCTTGACCCGGAACC
CGATACCCGCATCAAGATTGGTGAAATCTTCGATCACCCTTGGCTCCAACAAGATGGGAGTTCATCATCATTCGGTATGA
TCCAAGCTGCGTCCTCTCATTCTAAACCAGAGGTAGAGAAATGGGAGGCTGAATTGGAGCAAGCAATGGAGCTAAATGCT
TTCGACATAATCGGGTTCGCCTCGGGATGCGATCTAAGCGGGTTGATCGGTCCATTGCCAGATCGAGTTCGATTCGTCTT
GCCGGGTGGGGATTCCAAGTCAGTTCTGGACAAAGTTGAGAAGCTAGGGCGAGAGGAAGGGCTTGTAGTGAGGAGGAAAG
AGGAAGAATGGTGTGGAGGAGTTCATGTAGAGGCAACTAGTGGGAAATTCACTGCATATGTGAGGGTTAATCTATTGCCC
AAGAAAATACTGATGATAGAGGCTGAAAGGGTTATTGGAAGCGAGATTCCTAAATTTTGGCATCAACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27033.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis