Browse Element(s) Details


OsAffx.27043.1.S1_at

Description tigr:9633.m02500
TID=OsAffx.27043.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2750011/11carboxyl-terminal peptidase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g27460NANA5+15891959..15893082transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27470NANA5+15895302..15899444transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27480NANA5+15901933..15902550retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g27490OsAffx.11900.1.S1_at7/115+15907259..15912772retrotransposon protein, putative, unclassified
LOC_Os05g27490OsAffx.32166.1771.S1_s_at1/115+15907259..15912772retrotransposon protein, putative, unclassified
LOC_Os05g27500OsAffx.27043.1.S1_at11/115+15916461..15920308carboxyl-terminal peptidase, putative
LOC_Os05g27510OsAffx.14850.1.S1_x_at9/115+15923646..15924609hypothetical protein
LOC_Os05g27510Os.24478.1.S1_at6/115+15923646..15924609hypothetical protein
LOC_Os05g27520OsAffx.14851.1.S1_at11/115+15929458..15932338expressed protein
LOC_Os05g27520Os.14876.1.S1_at5/115+15929458..15932338expressed protein
LOC_Os05g27530Os.28554.1.S1_at11/115+15941088..15945585Ras family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27043.1.S1_at--995--3171Chr05:15919102..15919126 (25 bp)
AATTGGTGCTGGCTCTTGGGTCTCA
LOC_Os05g27500
OsAffx.27043.1.S1_at--774--10831Chr05:15919117..15919141 (25 bp)
TTGGGTCTCACCAAGCTTCAGTGGT
LOC_Os05g27500
OsAffx.27043.1.S1_at--28--4871Chr05:15919151..15919171 (21 bp)
GCTAGGTTTCATATTTCATGGCGTG
LOC_Os05g27500
OsAffx.27043.1.S1_at--536--3071Chr05:15919340..15919364 (25 bp)
AATCATAAGTGTCCTGGTTTCGTCC
LOC_Os05g27500
OsAffx.27043.1.S1_at--141--1531Chr05:15919370..15919394 (25 bp)
AGCAGTTCTGTTGTTCTTGGAGGCA
LOC_Os05g27500
OsAffx.27043.1.S1_at--1026--9811Chr05:15919415..15919439 (25 bp)
TATAACGGACCGCAATACGCAATTA
LOC_Os05g27500
OsAffx.27043.1.S1_at--586--8451Chr05:15919998..15920022 (25 bp)
GGCCAAGTTCTCAATTTAGTTACAT
LOC_Os05g27500
OsAffx.27043.1.S1_at--371--271Chr05:15920056..15920080 (25 bp)
ATATGTTCAGGGTCCAACAGCCTCA
LOC_Os05g27500
OsAffx.27043.1.S1_at--468--1071Chr05:15920102..15920126 (25 bp)
AGTGGACATTTTGCTTCTGAAGGGT
LOC_Os05g27500
OsAffx.27043.1.S1_at--171--611Chr05:15920177..15920201 (25 bp)
ATGCGTGTTATTCCAAACCCAGTTA
LOC_Os05g27500
OsAffx.27043.1.S1_at--1147--2571Chr05:15920192..15920216 (25 bp)
AACCCAGTTAAAGCCGATCCAGGAT
LOC_Os05g27500
Target Sequence 
AATTGGTGCTGGCTCTTGGGTCTCACCAAGCTTCAGTGGTGATAGCTTTGCTAGGTTTCATATTTCATGGCGTGATGAAG
TACAAAACAAGTCTTGCAACAATCATAAGTGTCCTGGTTTCGTCCAAGTTAGCAGTTCTGTTGTTCTTGGAGGCAGAATA
CAGCCAGTTTCTGTATATAACGGACCGCAATACGCAATTAAGTTTCTTATATTTAAGGACCCAAAGACTGAAAATTGGTG
GTTGGTGTATGGTGAGGAGAAAACAGCAATAGGATATTGGCCAAGTTCTCAATTTAGTTACATGAAGGAAATGGCCAGTA
AAGCATTGTGGGGTGGATATGTTCAGGGTCCAACAGCCTCAGAAGACTCTCCACAAATGGGCAGTGGACATTTTGCTTCT
GAAGGGTATGGCAAAGCAGCTTTTGTTAGAGATATTCAGGTCGTGAACGACGACAACATGCGTGTTATTCCAAACCCAGT
TAAAGCCGATCCAGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27043.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis