Browse Element(s) Details


OsAffx.27069.1.S1_at

Description tigr:9633.m02638
TID=OsAffx.27069.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2881010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28760NANA5+16782416..16782751hypothetical protein
LOC_Os05g28770OsAffx.27066.1.S1_at11/115+16787445..16791387expressed protein
LOC_Os05g28770OsAffx.26361.1.S1_x_at1/115+16787445..16791387expressed protein
LOC_Os05g28770OsAffx.26361.1.S1_at1/115+16787445..16791387expressed protein
LOC_Os05g28780Os.51575.1.S1_at10/115+16793895..16795827expressed protein
LOC_Os05g28790NANA5+16798352..16798876retrotransposon protein, putative, LINE subclass
LOC_Os05g28800OsAffx.27068.1.S1_at11/115+16804880..16805768hypothetical protein
LOC_Os05g28800OsAffx.27068.1.S1_x_at11/115+16804880..16805768hypothetical protein
LOC_Os05g28810OsAffx.27069.1.S1_at10/115+16806760..16807741hypothetical protein
LOC_Os05g28820NANA5+16808834..16815061retrotransposon protein, putative, unclassified
LOC_Os05g28830Os.20378.1.S1_at11/115+16816424..16818149expressed protein
LOC_Os05g28840Os.18438.1.S1_at11/115+16827979..16829065expressed protein
LOC_Os05g28840Os.54627.1.S1_at1/115+16827979..16829065expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27069.1.S1_at--938--9491Chr05:16806863..16806887 (25 bp)
TCTCCGGCACGGCAGATGGTGACGA
LOC_Os05g28810
OsAffx.27069.1.S1_at--766--7531NONE
GTGGCGGCGGCCGAAATGCGATGGC
NONE
OsAffx.27069.1.S1_at--832--4511Chr05:16807643..16807664 (22 bp)
GCCGAAATGCGATGGCAGATTGGCA
LOC_Os05g28810
OsAffx.27069.1.S1_at--914--5031Chr05:16807654..16807678 (25 bp)
GCAGATTGGCATGGATAACGAGCAA
LOC_Os05g28810
OsAffx.27069.1.S1_at--754--4711Chr05:16807662..16807686 (25 bp)
GCATGGATAACGAGCAAAACTTTGT
LOC_Os05g28810
OsAffx.27069.1.S1_at--419--5951Chr05:16807673..16807697 (25 bp)
GAGCAAAACTTTGTCTTCCTATGTG
LOC_Os05g28810
OsAffx.27069.1.S1_at--915--5131Chr05:16807675..16807699 (25 bp)
GCAAAACTTTGTCTTCCTATGTGTC
LOC_Os05g28810
OsAffx.27069.1.S1_at--386--2391Chr05:16807678..16807702 (25 bp)
AAACTTTGTCTTCCTATGTGTCCTC
LOC_Os05g28810
OsAffx.27069.1.S1_at--1045--10231Chr05:16807682..16807706 (25 bp)
TTTGTCTTCCTATGTGTCCTCCTAG
LOC_Os05g28810
OsAffx.27069.1.S1_at--749--8711Chr05:16807684..16807708 (25 bp)
TGTCTTCCTATGTGTCCTCCTAGAT
LOC_Os05g28810
OsAffx.27069.1.S1_at--770--3631Chr05:16807687..16807711 (25 bp)
CTTCCTATGTGTCCTCCTAGATTTT
LOC_Os05g28810
Target Sequence 
TCTCCGGCACGGCAGATGGTGACGACGGCAACGTCCTGGTGGCGGCGGCCGAAATGCGATGGCAGATTGGCATGGATAAC
GAGCAAAACTTTGTCTTCCTATGTGTCCTCCTAGATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27069.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis