Browse Element(s) Details


OsAffx.27087.1.S1_at

Description tigr:9633.m02780
TID=OsAffx.27087.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3060011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g30550Os.28943.1.S1_x_at4/115+17620169..17623346retrotransposon protein, putative, unclassified
LOC_Os05g30560OsAffx.10711.1.S1_x_at2/115+17624022..17626922retrotransposon protein, putative, unclassified
LOC_Os05g30560Os.27544.1.A1_at1/115+17624022..17626922retrotransposon protein, putative, unclassified
LOC_Os05g30560OsAffx.10711.1.S1_at1/115+17624022..17626922retrotransposon protein, putative, unclassified
LOC_Os05g30570Os.50845.1.S1_at11/115+17633492..17635002heavy metal-associated domain containing protein, expressed
LOC_Os05g30580Os.52085.1.S1_at11/115+17639694..17642149Subtilisin N-terminal Region family protein, expressed
LOC_Os05g30590NANA5+17643967..17645306hAT family dimerisation domain containing protein
LOC_Os05g30600OsAffx.27087.1.S1_at11/115+17645635..17646478hypothetical protein
LOC_Os05g30610Os.28346.3.S1_x_at8/115+17649421..17655139retrotransposon protein, putative, unclassified
LOC_Os05g30620Os.57089.1.S1_at4/115+17657038..17657532hypothetical protein
LOC_Os05g30630OsAffx.14890.1.S1_at11/115+17661375..17661829hypothetical protein
LOC_Os05g30630OsAffx.15866.1.S1_x_at1/115+17661375..17661829hypothetical protein
LOC_Os05g30640Os.57089.1.S1_at10/115+17670490..17672325expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27087.1.S1_at--365--9371Chr05:17645800..17645824 (25 bp)
TCGACGGCGAGATCCAGCTACTACA
LOC_Os05g30600
OsAffx.27087.1.S1_at--397--1531Chr05:17645830..17645854 (25 bp)
AGCATGTCAAGCAGCGTGTCCGGTA
LOC_Os05g30600
OsAffx.27087.1.S1_at--377--7251Chr05:17645847..17645871 (25 bp)
GTCCGGTACTGGCTCTCAGAATCAA
LOC_Os05g30600
OsAffx.27087.1.S1_at--862--5131Chr05:17645865..17645998 (25 bp)
GAATCAACGAGACTTCGACCGGGAG
LOC_Os05g30600
OsAffx.27087.1.S1_at--504--1591Chr05:17646084..17646108 (25 bp)
AGCTCGGCTTGGATGATCTTGTGCA
LOC_Os05g30600
OsAffx.27087.1.S1_at--1037--591Chr05:17646126..17646150 (25 bp)
ATGCCGTGATGGTCGAAGCACTCGT
LOC_Os05g30600
OsAffx.27087.1.S1_at--207--5392Chr05:17646140..17646164 (25 bp)
GAAGCACTCGTAGCTACGCAGCAAA
LOC_Os05g30600
OsAffx.27087.1.S1_at--712--3211Chr05:17646221..17646245 (25 bp)
CAAGTCACTCGGTTCGTGGAGGCGA
LOC_Os05g30600
OsAffx.27087.1.S1_at--826--4131Chr05:17646283..17646307 (25 bp)
CGCTGATAACACTTGGCGGCCAATT
LOC_Os05g30600
OsAffx.27087.1.S1_at--184--7311Chr05:17646358..17646382 (25 bp)
GTGCGGCATACGAATCTTGTCAGAA
LOC_Os05g30600
OsAffx.27087.1.S1_at--701--8611Chr05:17646424..17646448 (25 bp)
TGGTGCTTTCTCAGCCATATACAGG
LOC_Os05g30600
Target Sequence 
TCGACGGCGAGATCCAGCTACTACAGCAGCAGCATGTCAAGCAGCGTGTCCGGTACTGGCTCTCAGAATCAACGAGACTT
CGACCGGGAGCCCGACCATGCGCTGGAGAGGTGGTTCTCCGAGCTCGACGTCGGTTGGGTACTCCGGTCGGCGGCGGAGA
AGGAGCTAGCCGCCAAGCTCGGCTTGGATGATCTTGTGCAGCGGTGGACGCGAGGATATGCCGTGATGGTCGAAGCACTC
GTAGCTACGCAGCAAAATATGAAATTTCAGGATCATACCAATATGGAGCTAGAAGACGACCTCCGACCTCTCCAAGTCAC
TCGGTTCGTGGAGGCGACCGTATCCAAGATGCTTGCCTTTGCTGATGCCCTCGCCGCTGATAACACTTGGCGGCCAATTG
ACAAGCTCTCGCGGTCGCGGCTCATGTGCCTGTGCACCTCGATCAACGAGTGCGGCATACGAATCTTGTCAGAAATAATA
GTATTTGAGTTTGATTGCATATTCAGCAAAATGAATGGTGCTTTCTCAGCCATATACAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27087.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis