Browse Element(s) Details


OsAffx.27099.1.S1_at

Description tigr:9633.m02844
TID=OsAffx.27099.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to Z99707 RNA-binding like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3120010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g31160OsAffx.27098.1.S1_at11/115+18045208..18048514Peptide chain release factor 2, putative, expressed
LOC_Os05g31170NANA5+18054681..18056126Eukaryotic aspartyl protease family protein
LOC_Os05g31180OsAffx.4486.1.S1_at10/115+18061807..18062836hypothetical protein
LOC_Os05g31190NANA5+18064936..18065560expressed protein
LOC_Os05g31200OsAffx.27099.1.S1_at10/115+18066640..18069272hypothetical protein
LOC_Os05g31210Os.45957.4.S1_x_at8/115+18069483..18073584retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g31220Os.52749.1.S1_at6/115+18077106..18079883Cell division control protein 48 homolog B, putative
LOC_Os05g31230Os.17230.1.S1_at11/115+18080195..18087884N-acetyltransferase ESCO2, putative, expressed
LOC_Os05g31230Os.17230.1.S2_at11/115+18080195..18087884N-acetyltransferase ESCO2, putative, expressed
LOC_Os05g31230Os.17183.1.A1_s_at11/115+18080195..18087884N-acetyltransferase ESCO2, putative, expressed
LOC_Os05g31254Os.49416.1.S1_at10/115+18089229..18101722acetyltransferase, GNAT family protein, expressed
LOC_Os05g31254Os.39411.1.A1_at4/115+18089229..18101722acetyltransferase, GNAT family protein, expressed
LOC_Os05g31254Os.45957.4.S1_x_at1/115+18089229..18101722acetyltransferase, GNAT family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27099.1.S1_at--334--8531Chr05:18067534..18067558 (25 bp)
TGGACACAGCTGAGCCACTTGAGGG
LOC_Os05g31200
OsAffx.27099.1.S1_at--479--6771Chr05:18067495..18067519 (25 bp)
GTTACTTGGAACCTGCAGAGGCATA
LOC_Os05g31200
OsAffx.27099.1.S1_at--1056--851Chr05:18067453..18067477 (25 bp)
ATGGCTCATTACTGCCTTATGGCAG
LOC_Os05g31200
OsAffx.27099.1.S1_at--1101--3431Chr05:18067431..18067455 (25 bp)
CAGATTCTCTGGTAGCCTTGGTTAT
LOC_Os05g31200
OsAffx.27099.1.S1_at--469--6551Chr05:18067168..18067189 (22 bp)
GATTATGGTTATGGCCCCAGTGGAA
LOC_Os05g31200
OsAffx.27099.1.S1_at--330--5011NONE
GCAGGCATGGCAATACCGTATATCT
NONE
OsAffx.27099.1.S1_at--1125--5491Chr05:18067061..18067085 (25 bp)
GAACAATATACGTCTGAAACCGGGT
LOC_Os05g31200
OsAffx.27099.1.S1_at--1127--7671Chr05:18066745..18066768 (24 bp)
GGGTATAGAGCATCCCGAAGTATCA
LOC_Os05g31200
OsAffx.27099.1.S1_at--389--5131Chr05:18066712..18066736 (25 bp)
GCAAATCGAGTTCCACTGCATTTTT
LOC_Os05g31200
OsAffx.27099.1.S1_at--5--4951Chr05:18066695..18066719 (25 bp)
GCATTTTTGTCATACGGAGCGCTCA
LOC_Os05g31200
OsAffx.27099.1.S1_at--488--8091Chr05:18066680..18066704 (25 bp)
GGAGCGCTCACATGGCTGGATTCAG
LOC_Os05g31200
Target Sequence 
TGGACACAGCTGAGCCACTTGAGGGTGGTTCAGGTGGAGGTTACTTGGAACCTGCAGAGGCATATGGACCATATGGAGCT
TATGGCTCATTACTGCCTTATGGCAGATTCTCTGGTAGCCTTGGTTATGATTATGGTTATGGCCCCAGTGGAAATAGTAG
CAGGCATGGCAATACCGTATATCTTGAGAACAATATACGTCTGAAACCGGGTATAGAGCATCCCGAAGTATCAAAACCAA
TGCAAATCGAGTTCCACTGCATTTTTGTCATACGGAGCGCTCACATGGCTGGATTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27099.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis