Browse Element(s) Details


OsAffx.27127.1.S1_at

Description tigr:9633.m03019
TID=OsAffx.27127.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=two-component response regulator protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3289011/11myb-like DNA-binding domain, SHAQKYF class family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32850Os.15515.1.S1_at7/115+19149703..19157101CBS domain-containing protein, putative, expressed
LOC_Os05g32860NANA5+19157799..19158107hypothetical protein
LOC_Os05g32870OsAffx.4501.1.S1_at11/115+19170471..19171728hypothetical protein
LOC_Os05g32880OsAffx.14931.1.S1_at11/115+19172595..19176745Response regulator receiver domain containing protein
LOC_Os05g32890OsAffx.27127.1.S1_at11/115+19178437..19182453myb-like DNA-binding domain, SHAQKYF class family protein
LOC_Os05g32900OsAffx.14584.2.S1_x_at11/115+19199780..19200384Hexose carrier protein HEX6, putative
LOC_Os05g32900OsAffx.14584.2.S1_at11/115+19199780..19200384Hexose carrier protein HEX6, putative
LOC_Os05g32910NANA5+19201172..19201408hypothetical protein
LOC_Os05g32920OsAffx.940.1.S1_x_at1/115+19203336..19207525hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009736biological_processcytokinin mediated signaling
GO:0000156molecular_functiontwo-component response regulator activity
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27127.1.S1_at--189--1331Chr05:19181571..19181595 (25 bp)
AGAGGTTTGTCAGCGTCGTCCTTCA
LOC_Os05g32890
OsAffx.27127.1.S1_at--804--2931Chr05:19179998..19180021 (24 bp)
AAGGCTACTCCAAACCAGATACTAC
LOC_Os05g32890
OsAffx.27127.1.S1_at--644--6451Chr05:19179981..19180005 (25 bp)
GATACTACCACTTCTGAATCGGGAA
LOC_Os05g32890
OsAffx.27127.1.S1_at--317--2271Chr05:19179483..19179507 (25 bp)
AAATCAAAAGCCCTGCCAAGCTGCT
LOC_Os05g32890
OsAffx.27127.1.S1_at--561--2691Chr05:19179466..19179490 (25 bp)
AAGCTGCTCCACAATACCGATAGGG
LOC_Os05g32890
OsAffx.27127.1.S1_at--1083--2551Chr05:19179439..19179463 (25 bp)
AACTGTTCATGGGATACCGCTTGCT
LOC_Os05g32890
OsAffx.27127.1.S1_at--1041--451Chr05:19179383..19179407 (25 bp)
ATCTCATTGTCCCTTTCAATCGGAT
LOC_Os05g32890
OsAffx.27127.1.S1_at--280--6351Chr05:19179361..19179385 (25 bp)
GATAACTTTTGTGAGACCCCGAGGA
LOC_Os05g32890
OsAffx.27127.1.S1_at--122--6651Chr05:19179282..19179306 (25 bp)
GTTGTTGTGCCCACAGCTACAAGTA
LOC_Os05g32890
OsAffx.27127.1.S1_at--942--6371Chr05:19179216..19179240 (25 bp)
GATCTTTTTGATCACGGGACCCTGA
LOC_Os05g32890
OsAffx.27127.1.S1_at--362--1351Chr05:19179189..19179213 (25 bp)
AGAGATTCATCTTCCACAAGTCATG
LOC_Os05g32890
Target Sequence 
AGAGGTTTGTCAGCGTCGTCCTTCAGCTCGGAGTTGATAAGGCTACTCCAAACCAGATACTACCACTTCTGAATCGGGAA
GATTTAACTCGGGATCAGAGATTCAGAATAGCTCTAACTAAATCAAAAGCCCTGCCAAGCTGCTCCACAATACCGATAGG
GGAAACTGTTCATGGGATACCGCTTGCTCTTCAAGCTATTGGAACAGGAAACAATCAACATCTCATTGTCCCTTTCAATC
GGATAACTTTTGTGAGACCCCGAGGAGTTGAAATTGGTCAAAATGGAGTGGTGGGAGGACTGGTTACGGGTAATAATAAT
GTTGTTGTGCCCACAGCTACAAGTATTATAGCCAGAGCATTTGGGCGAGAGATAGTTAATGGTGCTGATCTTTTTGATCA
CGGGACCCTGATTAGAGATTCATCTTCCACAAGTCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27127.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis