Browse Element(s) Details


OsAffx.27189.1.S1_at

Description tigr:9633.m03340
TID=OsAffx.27189.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3584011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35800OsAffx.27186.1.S1_at11/115+21157567..21158431expressed protein
LOC_Os05g35810OsAffx.27187.1.S1_at11/115+21164478..21165906hypothetical protein
LOC_Os05g35820OsAffx.27188.1.S1_at11/115+21167622..21168724hypothetical protein
LOC_Os05g35830OsAffx.27188.2.S1_at11/115+21175629..21176700expressed protein
LOC_Os05g35840OsAffx.27189.1.S1_at11/115+21183159..21184439hypothetical protein
LOC_Os05g35850OsAffx.27190.1.S1_at11/115+21186034..21187616hypothetical protein
LOC_Os05g35850OsAffx.22510.1.S1_s_at1/115+21186034..21187616hypothetical protein
LOC_Os05g35850OsAffx.20967.1.S1_x_at1/115+21186034..21187616hypothetical protein
LOC_Os05g35860NANA5+21189519..21194570retrotransposon protein, putative, unclassified
LOC_Os05g35870NANA5+21196280..21196808hypothetical protein
LOC_Os05g35880Os.47463.1.S1_x_at5/115+21197909..21201607transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g35880Os.14491.2.S1_x_at5/115+21197909..21201607transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g35890NANA5+21204195..21207526transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g35900OsAffx.4537.1.S1_at10/115+21208886..21209377hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27189.1.S1_at--1035--391Chr05:21183757..21183781 (25 bp)
ATCAGCGTTGTCCACGGCTCGTCGT
LOC_Os05g35840
OsAffx.27189.1.S1_at--658--6292Chr05:21183828..21183852 (25 bp)
GATGATAACACACGTCGCCATGGCT
LOC_Os05g35840
OsAffx.27189.1.S1_at--283--1752Chr05:21214920..21215047 (25 bp)
ACCTCATGGATAGTGCCGGTGATTG
NONE
OsAffx.27189.1.S1_at--779--7411Chr05:21184035..21184059 (25 bp)
GTGATTGTGTTCGTGTTGCTCCTAC
LOC_Os05g35840
OsAffx.27189.1.S1_at--58--6111Chr05:21184074..21184098 (25 bp)
GAGTCTGATTGCGACAAGATCCACA
LOC_Os05g35840
OsAffx.27189.1.S1_at--168--3351Chr05:21184139..21184163 (25 bp)
CACGGTGCTCGGAATCATCTCCTAC
LOC_Os05g35840
OsAffx.27189.1.S1_at--50--6392Chr05:21215215..21215239 (25 bp)
GATCGTGGTCCCGATGGTCATCGCG
NONE
OsAffx.27189.1.S1_at--1026--4611Chr05:21184221..21184245 (25 bp)
GCGTTCCAGCCGGTATATCCTAATC
LOC_Os05g35840
OsAffx.27189.1.S1_at--874--6851Chr05:21184233..21184257 (25 bp)
GTATATCCTAATCCTCTTCTGGTGC
LOC_Os05g35840
OsAffx.27189.1.S1_at--764--6992Chr05:21215368..21215392 (25 bp)
GTACGGGCAAGCACCGAACCAGCAA
NONE
OsAffx.27189.1.S1_at--226--10111Chr05:21184383..21184407 (25 bp)
TATGGATGGCAAGCGCCGAACCAGC
LOC_Os05g35840
Target Sequence 
ATCAGCGTTGTCCACGGCTCGTCGTCGAGATCAGCAGCGGCCGAGCTGGGAATCTGCGCGGCCATCTTCCTGATGATAAC
ACACGTCGCCATGGCTGCTGCCGGCTGCTGCTGCCGCAGCTTCTGCATCCCCTCCGAGACGGCGCGGGTCGTCTGCGCCA
TCACCTCATGGATAGTGCCGGTGATTGTGTTCGTGTTGCTCCTACACGCCGCGGTCGAGGAGTCTGATTGCGACAAGATC
CACAAGGGCGTCTACGCTGGCACGGGCGTACTGGTCCTCGTCTCCACGGTGCTCGGAATCATCTCCTACCTCATGCTCCG
CACGCGGCCAGAGCCAACGCCGCCGATCGTGGTCCCGATGGTCATCGCGTTCCAGCCGGTATATCCTAATCCTCTTCTGG
TGCCTGTGCCGGTTCAAGCGCCGCCGCCGAACCAGGCGTTCGCTCATCCGGCTACTTTGCCGCCACAAGGAGGATGGTAC
GGGCAAGCACCGAACCAGCAATTCGCGGCACCTGCTCCTGCTCAAGGCTATGGATGGCAAGCGCCGAACCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27189.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis