Browse Element(s) Details


OsAffx.27206.1.S1_s_at

Description tigr:9633.m03433
TID=OsAffx.27206.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3722010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37190Os.54232.1.S1_at11/115+21654125..21656515Zinc finger, C2H2 type family protein, expressed
LOC_Os05g37190OsAffx.17417.1.S1_x_at2/115+21654125..21656515Zinc finger, C2H2 type family protein, expressed
LOC_Os05g37190OsAffx.29835.1.S1_x_at2/115+21654125..21656515Zinc finger, C2H2 type family protein, expressed
LOC_Os05g37190OsAffx.17417.2.S1_x_at2/115+21654125..21656515Zinc finger, C2H2 type family protein, expressed
LOC_Os05g37200Os.47421.1.S1_at11/115+21667636..21670977Integral membrane protein DUF6 containing protein, expressed
LOC_Os05g37210OsAffx.14991.1.S1_at11/115+21675159..21676472anthocyanin-related membrane protein 1, putative
LOC_Os05g37220OsAffx.27206.1.S1_x_at11/115+21676659..21677393hypothetical protein
LOC_Os05g37220OsAffx.27206.1.S1_s_at10/115+21676659..21677393hypothetical protein
LOC_Os05g37220Os.23651.1.A1_at1/115+21676659..21677393hypothetical protein
LOC_Os05g37230OsAffx.447.1.S1_at4/115+21689891..21694442retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g37230Os.52609.1.S1_at1/115+21689891..21694442retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g37239NANA5+21696613..21697134NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27206.1.S1_s_at--712--431Chr05:21677170..21677194 (25 bp)
ATCTAGCTTTTGCAGTGGTAGCCAT
LOC_Os05g37220
OsAffx.27206.1.S1_s_at--530--3711Chr05:21677172..21677196 (25 bp)
CTAGCTTTTGCAGTGGTAGCCATTG
LOC_Os05g37220
OsAffx.27206.1.S1_s_at--293--1551Chr05:21677174..21677198 (25 bp)
AGCTTTTGCAGTGGTAGCCATTGGA
LOC_Os05g37220
OsAffx.27206.1.S1_s_at--654--3671Chr05:21677176..21677200 (25 bp)
CTTTTGCAGTGGTAGCCATTGGATT
LOC_Os05g37220
OsAffx.27206.1.S1_s_at--1023--9031Chr05:21677180..21677204 (25 bp)
TGCAGTGGTAGCCATTGGATTGATC
LOC_Os05g37220
OsAffx.27206.1.S1_s_at--885--6591Chr05:21677197..21677218 (22 bp)
GATTGATCATCTACTCCATAAACGA
LOC_Os05g37220
OsAffx.27206.1.S1_s_at--914--8831Chr05:21677200..21677317 (25 bp)
TGATCATCTACTCCATAAACGAGAG
LOC_Os05g37220
OsAffx.27206.1.S1_s_at--468--451Chr05:21677205..21677322 (25 bp)
ATCTACTCCATAAACGAGAGTTCAG
LOC_Os05g37220
OsAffx.27206.1.S1_s_at--343--9891NONE
TACTCCATAAACGAGAGTTCAGATG
NONE
OsAffx.27206.1.S1_s_at--698--3431Chr05:21677320..21677344 (25 bp)
CAGATGATGAGACAGCTGCAAGTAC
LOC_Os05g37220
OsAffx.27206.1.S1_s_at--743--2151Chr05:21677331..21677355 (25 bp)
ACAGCTGCAAGTACAATGGAAACTG
LOC_Os05g37220
Target Sequence 
ATCTAGCTTTTGCAGTGGTAGCCATTGGATTGATCATCTACTCCATAAACGAGAGTTCAGATGATGAGACAGCTGCAAGT
ACAATGGAAACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27206.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis