Browse Element(s) Details


OsAffx.27216.1.S1_at

Description tigr:9633.m03516
TID=OsAffx.27216.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3799010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37950Os.18125.1.S1_at10/115+22179862..22183821expressed protein
LOC_Os05g37960OsAffx.27215.1.S1_at11/115+22188572..22190439hypothetical protein
LOC_Os05g37970Os.5299.2.S1_a_at11/115+22193096..22195540universal stress protein family protein, expressed
LOC_Os05g37980OsAffx.15003.1.S1_at11/115+22196702..22200893Partner of SLD five, PSF1 family protein
LOC_Os05g37990OsAffx.27216.1.S1_at10/115+22207223..22208039hypothetical protein
LOC_Os05g37990OsAffx.27216.1.S1_x_at10/115+22207223..22208039hypothetical protein
LOC_Os05g38000Os.49671.1.S1_at11/115+22210337..22214021expressed protein
LOC_Os05g38010NANA5+22214691..22215174Leucine-rich repeat receptor protein kinase EXS precursor, putative
LOC_Os05g38020Os.55361.1.S1_x_at11/115+22216395..22216893expressed protein
LOC_Os05g38030OsAffx.15004.1.S1_at11/115+22219157..22219435hypothetical protein
LOC_Os05g38040Os.11961.1.S1_at11/115+22220208..22223175expressed protein
LOC_Os05g38050OsAffx.4552.1.S1_at11/115+22224749..22225217hypothetical protein
LOC_Os05g38060OsAffx.19542.3.S1_x_at4/115+22229452..22233016retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27216.1.S1_at--661--2411Chr05:22207333..22207357 (25 bp)
AAAACCGCTCCGAAGTCGGGCATGG
LOC_Os05g37990
OsAffx.27216.1.S1_at--1156--2351Chr05:22207334..22207358 (25 bp)
AAACCGCTCCGAAGTCGGGCATGGA
LOC_Os05g37990
OsAffx.27216.1.S1_at--935--2611Chr05:22207335..22207359 (25 bp)
AACCGCTCCGAAGTCGGGCATGGAG
LOC_Os05g37990
OsAffx.27216.1.S1_at--1106--4991NONE
GCATGGAGGTCCGACCTCGAGCTTG
NONE
OsAffx.27216.1.S1_at--823--3491Chr05:22207921..22207940 (20 bp)
CATGGAGGTCCGACCTCGAGCTTGC
LOC_Os05g37990
OsAffx.27216.1.S1_at--367--4591Chr05:22207953..22207977 (25 bp)
GCGACAACGACCTTGACCTTGTTCG
LOC_Os05g37990
OsAffx.27216.1.S1_at--727--4091Chr05:22207954..22207978 (25 bp)
CGACAACGACCTTGACCTTGTTCGC
LOC_Os05g37990
OsAffx.27216.1.S1_at--8--5591Chr05:22207955..22207979 (25 bp)
GACAACGACCTTGACCTTGTTCGCG
LOC_Os05g37990
OsAffx.27216.1.S1_at--247--2211Chr05:22207956..22207980 (25 bp)
ACAACGACCTTGACCTTGTTCGCGG
LOC_Os05g37990
OsAffx.27216.1.S1_at--685--3251Chr05:22207957..22207981 (25 bp)
CAACGACCTTGACCTTGTTCGCGGG
LOC_Os05g37990
OsAffx.27216.1.S1_at--621--3611Chr05:22207964..22207988 (25 bp)
CTTGACCTTGTTCGCGGGGGCAACA
LOC_Os05g37990
Target Sequence 
AAAACCGCTCCGAAGTCGGGCATGGAGGTCCGACCTCGAGCTTGCCAAAGCTACATGGCGACAACGACCTTGACCTTGTT
CGCGGGGGCAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27216.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis