Browse Element(s) Details


OsAffx.27316.1.S1_at

Description tigr:9633.m04236
TID=OsAffx.27316.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4534011/11DNA polymerase III, delta subunit family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45270Os.53442.1.S1_at10/115+26193336..26196142ribosomal protein L9, N-terminal domain containing protein, expressed
LOC_Os05g45270OsAffx.4622.1.S1_at1/115+26193336..26196142ribosomal protein L9, N-terminal domain containing protein, expressed
LOC_Os05g45280Os.5747.1.S1_at9/115+26196261..26199588membrane protein, putative, expressed
LOC_Os05g45290OsAffx.15112.1.S1_at11/115+26201544..26202035hypothetical protein
LOC_Os05g45300Os.52229.1.S1_at11/115+26202553..26205166enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os05g45310Os.18326.1.S1_at11/115+26205668..26208715ER lumen protein retaining receptor, putative, expressed
LOC_Os05g45320Os.50603.1.S1_at11/115+26209089..26211365expressed protein
LOC_Os05g45320Os.36280.1.S1_at10/115+26209089..26211365expressed protein
LOC_Os05g45330NANA5+26212287..26213257expressed protein
LOC_Os05g45340OsAffx.27316.1.S1_at11/115+26217143..26223824DNA polymerase III, delta subunit family protein
LOC_Os05g45340OsAffx.7824.1.S1_s_at1/115+26217143..26223824DNA polymerase III, delta subunit family protein
LOC_Os05g45350Os.15152.2.S1_at11/115+26227598..26230909DnaJ domain containing protein, expressed
LOC_Os05g45350Os.15152.1.S1_a_at11/115+26227598..26230909DnaJ domain containing protein, expressed
LOC_Os05g45360NANA5+26234495..26235451hypothetical protein
LOC_Os05g45370Os.11374.1.S1_s_at11/115+26239195..26242888LEM3 family/CDC50 family protein, expressed
LOC_Os05g45370OsAffx.27318.1.S1_at11/115+26239195..26242888LEM3 family/CDC50 family protein, expressed
LOC_Os05g45380OsAffx.27319.2.S1_s_at11/115+26245355..26246307expressed protein
LOC_Os05g45390OsAffx.27319.1.S1_at11/115+26247703..26248228hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0010026biological_processtrichome differentiation (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27316.1.S1_at--1140--1551Chr05:26221166..26221190 (25 bp)
AGCTATTTCACCGTATCCTGAGGAT
LOC_Os05g45340
OsAffx.27316.1.S1_at--366--6171Chr05:26221185..26221209 (25 bp)
GAGGATAGCACTTCCAATGTGGCAT
LOC_Os05g45340
OsAffx.27316.1.S1_at--949--6691Chr05:26221234..26221258 (25 bp)
GTTCCGCTTCTTCCAGAGGTGAAAA
LOC_Os05g45340
OsAffx.27316.1.S1_at--108--2591Chr05:26221284..26221308 (25 bp)
AACGTGGTCCATGGTGCTAATTCAA
LOC_Os05g45340
OsAffx.27316.1.S1_at--643--7711Chr05:26221321..26221345 (25 bp)
GGGTGCAATCAGATCCACATATATT
LOC_Os05g45340
OsAffx.27316.1.S1_at--616--8091Chr05:26221371..26221395 (25 bp)
GGACCTTCTCAAGTGGACTGGCATA
LOC_Os05g45340
OsAffx.27316.1.S1_at--89--1251Chr05:26221892..26221916 (25 bp)
AGATTGGAGCCTAAGTCGAGTTTAC
LOC_Os05g45340
OsAffx.27316.1.S1_at--77--2931Chr05:26221925..26221949 (25 bp)
AAGGCTTCAAGCACTACTAGACGAA
LOC_Os05g45340
OsAffx.27316.1.S1_at--481--8571Chr05:26223282..26223306 (25 bp)
TGGATCTTCCTCTATTCGAGAGCAT
LOC_Os05g45340
OsAffx.27316.1.S1_at--747--1351Chr05:26223300..26223324 (25 bp)
AGAGCATGCAGTTGCTGGCCTTTTC
LOC_Os05g45340
OsAffx.27316.1.S1_at--198--2171Chr05:26223335..26223774 (25 bp)
ACACCGTACATAAAGGCTGCAGCAT
LOC_Os05g45340
Target Sequence 
AGCTATTTCACCGTATCCTGAGGATAGCACTTCCAATGTGGCATTAAGGAGGTCTTTCACTAGACATAGTTCCGCTTCTT
CCAGAGGTGAAAACTTAATTAGGAGACTTCAAAAAGACAACGTGGTCCATGGTGCTAATTCAAATCAGACACGATGGGTG
CAATCAGATCCACATATATTGACTGAAGGTGAAATTATAGAAGTAGGACCTTCTCAAGTGGACTGGCATAGTGAACCAAA
TAACAGCGCCGGTGTCAGAAAAGAAAACATAGTTCTTCAAGGACGAGAAGTTGTGAATAATGAGCATGGCCGACAAAACA
GCATAGTAAGGGGCAAGGTATCTCTTGCTCATGTCATTAACAAGGCAGAAACTTGTTCACAACAAGGAGGAGATTGGAGC
CTAAGTCGAGTTTACTTTGTTGGAAGGCTTCAAGCACTACTAGACGAAAGGGTACATTCCATTGGATATTTGGATCTTCC
TCTATTCGAGAGCATGCAGTTGCTGGCCTTTTCTCTGAAGGAAACACCGTACATAAAGGCTGCAGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27316.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis