Browse Element(s) Details


OsAffx.27365.1.S1_at

Description tigr:9633.m04503
TID=OsAffx.27365.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4826011/11condensation domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48200Os.27638.1.S1_at11/115+27547570..27553180Glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os05g48210Os.27660.1.S1_at11/115+27554824..27555702expressed protein
LOC_Os05g48220Os.39014.1.S1_at8/115+27557400..2755946460S ribosomal protein L33-B, putative, expressed
LOC_Os05g48230Os.25211.1.S1_at11/115+27559844..27564573expressed protein
LOC_Os05g48240Os.8710.1.S1_at11/115+27564708..27570395Dynamin-related protein 1A, putative, expressed
LOC_Os05g48250NANA5+27574407..27575238hypothetical protein
LOC_Os05g48260OsAffx.27365.1.S1_at11/115+27577574..27581528condensation domain-containing protein, putative, expressed
LOC_Os05g48270Os.25562.1.S1_at11/115+27583058..27586077auxin-responsive protein, putative, expressed
LOC_Os05g48280OsAffx.15144.1.S1_at6/115+27590665..27596587expressed protein
LOC_Os05g48290OsAffx.15145.1.S1_at11/115+27600654..27605075T-complex protein 1, beta subunit, putative, expressed
LOC_Os05g48290OsAffx.15145.1.S1_x_at11/115+27600654..27605075T-complex protein 1, beta subunit, putative, expressed
LOC_Os05g48290Os.8383.1.S1_at8/115+27600654..27605075T-complex protein 1, beta subunit, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27365.1.S1_at--674--3971Chr05:27580372..27580396 (25 bp)
CGGTCTGCTCTTCTTGTTAACATCA
LOC_Os05g48260
OsAffx.27365.1.S1_at--802--2471Chr05:27580401..27580555 (25 bp)
AACACCTGGCTTACATGTATTGGCA
LOC_Os05g48260
OsAffx.27365.1.S1_at--5--9891Chr05:27580610..27580634 (25 bp)
TACATCGTACTTCCTTTCCGTATAG
LOC_Os05g48260
OsAffx.27365.1.S1_at--875--3511Chr05:27580636..27580660 (25 bp)
CATGTTCCACGATCCTCTTGAATAT
LOC_Os05g48260
OsAffx.27365.1.S1_at--447--3071Chr05:27580711..27580735 (25 bp)
AATCTTCACTTATTGGAGCGGCAAC
LOC_Os05g48260
OsAffx.27365.1.S1_at--594--9471Chr05:27580964..27580988 (25 bp)
TCTGTCATTCTCGAGCATGGTCGGA
LOC_Os05g48260
OsAffx.27365.1.S1_at--137--9931Chr05:27581010..27581034 (25 bp)
TACGGGCATCCTATCGAGTACATTG
LOC_Os05g48260
OsAffx.27365.1.S1_at--213--4991Chr05:27581051..27581393 (25 bp)
GCATCCACATGCACTGACAGTACAT
LOC_Os05g48260
OsAffx.27365.1.S1_at--111--5491Chr05:27581408..27581432 (25 bp)
GAACATTATCAAGCTTGTCCTCGCC
LOC_Os05g48260
OsAffx.27365.1.S1_at--27--711Chr05:27581437..27581461 (25 bp)
ATGATGCACAGTTCCCGGATGCTCA
LOC_Os05g48260
OsAffx.27365.1.S1_at--17--8571Chr05:27581470..27581494 (25 bp)
TGGATGATTTCGCTGAGTCCCTCAG
LOC_Os05g48260
Target Sequence 
CGGTCTGCTCTTCTTGTTAACATCAGGAAAACACCTGGCTTACATGTATTGGCAGAAATGATGAATTCCAACAAGAACAA
TGTTGCGAGATGGGGAAATCTAATTGGTTACATCGTACTTCCTTTCCGTATAGCCATGTTCCACGATCCTCTTGAATATA
TTCGTCAGGGGAAAAGAACAGTTGACAGGAAGAAGAGCTCGTTGGAAGCAATCTTCACTTATTGGAGCGGCAACCTAATA
GTCAAACTTTTTGGCATTAAGACTGCAGCTGCTCTCTGCCATGGCATGCTCGCTAATACCACTCTGTCATTCTCGAGCAT
GGTCGGACCTGCAGAGAAGGTGGAGTTCTACGGGCATCCTATCGAGTACATTGCCCCAAGTGTATATGGGCATCCACATG
CACTGACAGTACATTACCAGAGCTACATGAACATTATCAAGCTTGTCCTCGCCGTCGATGATGCACAGTTCCCGGATGCT
CACCAGCTGCTGGATGATTTCGCTGAGTCCCTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27365.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis