Browse Element(s) Details


OsAffx.27370.1.S1_at

Description tigr:9633.m04539
TID=OsAffx.27370.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4857011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48520Os.53194.1.S1_at11/115+27723814..27726424Glyoxal oxidase N-terminus family protein, expressed
LOC_Os05g48530OsAffx.25936.1.S1_s_at11/115+27728963..27731944transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g48530OsAffx.25936.7.S1_s_at11/115+27728963..27731944transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g48530OsAffx.25936.2.S1_x_at5/115+27728963..27731944transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g48530OsAffx.25936.5.S1_x_at1/115+27728963..27731944transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g48540NANA5+27733571..27733831hypothetical protein
LOC_Os05g48550Os.10827.1.S1_x_at7/115+27734223..27737766transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g48550Os.46055.2.S1_x_at4/115+27734223..27737766transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g48560OsAffx.15151.1.S1_at8/115+27740076..27744619expressed protein
LOC_Os05g48570OsAffx.27370.1.S1_at11/115+27749734..27751250hypothetical protein
LOC_Os05g48580NANA5+27756107..27757192hypothetical protein
LOC_Os05g48590Os.8928.1.S1_at11/115+27762617..27767121Auxin-responsive protein IAA8, putative, expressed
LOC_Os05g48590Os.56074.1.S1_at1/115+27762617..27767121Auxin-responsive protein IAA8, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27370.1.S1_at--902--2211Chr05:27751150..27751174 (25 bp)
ACAAGCCAAAGCAGCCGCAGCGAGG
LOC_Os05g48570
OsAffx.27370.1.S1_at--921--4631Chr05:27751120..27751144 (25 bp)
GCGTTGCGCAGCTCGAGAAGATCAG
LOC_Os05g48570
OsAffx.27370.1.S1_at--457--1371Chr05:27751090..27751114 (25 bp)
AGAGCGAAATGGCAGCCGGCTACCT
LOC_Os05g48570
OsAffx.27370.1.S1_at--345--4051Chr05:27751036..27751060 (25 bp)
CGATCCATGGAATTGACAGCCTCAA
LOC_Os05g48570
OsAffx.27370.1.S1_at--137--6051Chr05:27750203..27750227 (25 bp)
GAGATATCAGATACGGCGAATTCCA
LOC_Os05g48570
OsAffx.27370.1.S1_at--402--7611Chr05:27750189..27750213 (25 bp)
GGCGAATTCCAATCAACGAGTCCCA
LOC_Os05g48570
OsAffx.27370.1.S1_at--691--371Chr05:27750180..27750202 (23 bp)
ATCAACGAGTCCCATCATCAGGTCA
LOC_Os05g48570
OsAffx.27370.1.S1_at--925--3351Chr05:27750005..27750029 (25 bp)
CACCGCCTAACCATGAAGCTATATA
LOC_Os05g48570
OsAffx.27370.1.S1_at--557--3751Chr05:27749828..27749957 (25 bp)
CTCTCTTCGAACCTGAGGAATCCAT
LOC_Os05g48570
OsAffx.27370.1.S1_at--365--9731Chr05:27749798..27749822 (25 bp)
TAAGGAGACACTACGGCCTAAACCA
LOC_Os05g48570
OsAffx.27370.1.S1_at--988--8371Chr05:27749784..27749808 (25 bp)
GGCCTAAACCAACCGGTAGATCACT
LOC_Os05g48570
Target Sequence 
ACAAGCCAAAGCAGCCGCAGCGAGGGCTCGGCGTTGCGCAGCTCGAGAAGATCAGGATTCAGAGCGAAATGGCAGCCGGC
TACCTGCAGAATCCTCCTCTTGGCCAGCCACCTCCGATCCATGGAATTGACAGCCTCAACCTGATGGCCTATGGAGGGAG
CAGATCAGGAGATATCAGATACGGCGAATTCCAATCAACGAGTCCCATCATCAGGTCACCGCCTAACCATGAAGCTATAT
ATGGAGCTGCAGCTCATTACTCTCATCCCAGCAGCGACCACACATTGCCTCTCTTCGAACCTGAGGAATCCATTTACTTA
AGGAGACACTACGGCCTAAACCAACCGGTAGATCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27370.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis