Browse Element(s) Details


OsAffx.27380.1.S1_at

Description tigr:9633.m04622
TID=OsAffx.27380.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AY086615 putative transcription factor MYB24
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4931011/11Transcription factor MYB21, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49280NANA5+28188550..28189325GATA zinc finger family protein
LOC_Os05g49290Os.25370.1.S1_at9/115+28194894..28197963very-long-chain fatty acid condensing enzyme, putative, expressed
LOC_Os05g49300Os.5739.1.S1_at10/115+28206568..28210000NifU-like N-terminal domain containing protein, mitochondrial precursor, putative, expressed
LOC_Os05g49310OsAffx.27380.1.S1_at11/115+28213403..28215056Transcription factor MYB21, putative
LOC_Os05g49320OsAffx.4662.1.S1_at11/115+28216068..2821680950S ribosomal protein L12-1, chloroplast precursor, putative, expressed
LOC_Os05g49320Os.7971.1.S1_x_at1/115+28216068..2821680950S ribosomal protein L12-1, chloroplast precursor, putative, expressed
LOC_Os05g49330NANA5+28217863..28218222hypothetical protein
LOC_Os05g49340NANA5+28221357..28221863hypothetical protein
LOC_Os05g49350Os.47971.1.A1_at11/115+28223817..28224783expressed protein
LOC_Os05g49360NANA5+28226592..28227075hypothetical protein
LOC_Os05g49370Os.50975.1.S1_at11/115+28227633..28228661expressed protein
LOC_Os05g49380Os.17122.1.S1_at11/115+28231795..28235367Protease Do-like 1, chloroplast precursor, putative, expressed
LOC_Os05g49390OsAffx.27381.1.S1_at11/115+28236893..28242625hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27380.1.S1_at--1134--6171Chr05:28213877..28213901 (25 bp)
GAGGAGCACACGCTCATCGTCGAGC
LOC_Os05g49310
OsAffx.27380.1.S1_at--873--9611Chr05:28213890..28213914 (25 bp)
TCATCGTCGAGCTACAGGCCAGATG
LOC_Os05g49310
OsAffx.27380.1.S1_at--400--2811Chr05:28214601..28214625 (25 bp)
AAGATTGCAAGGTACCTTCCTGGCC
LOC_Os05g49310
OsAffx.27380.1.S1_at--1123--2331Chr05:28214683..28214707 (25 bp)
AAAGCACTGACGGAATTTACGCGAC
LOC_Os05g49310
OsAffx.27380.1.S1_at--586--1651Chr05:28214715..28214739 (25 bp)
AGCGAAAGCATCATGCCTGCGGCTA
LOC_Os05g49310
OsAffx.27380.1.S1_at--986--9131Chr05:28214732..28214756 (25 bp)
TGCGGCTACAGTGCACCAGAACACG
LOC_Os05g49310
OsAffx.27380.1.S1_at--848--4351Chr05:28214747..28214771 (25 bp)
CCAGAACACGGTGGCCGAGGACCAA
LOC_Os05g49310
OsAffx.27380.1.S1_at--18--7111Chr05:28214817..28214841 (25 bp)
GTCACGCAGGAGTACGCCACTGAGG
LOC_Os05g49310
OsAffx.27380.1.S1_at--171--8591Chr05:28214867..28214891 (25 bp)
TGGTAGCTACTTGGACCAGCTGCAG
LOC_Os05g49310
OsAffx.27380.1.S1_at--513--911Chr05:28214894..28214918 (25 bp)
AGGCTACGCGAGCTCAATCCATGGA
LOC_Os05g49310
OsAffx.27380.1.S1_at--601--1071Chr05:28214984..28215008 (25 bp)
AGCGTCGAGCGACAACTTCTGGGCC
LOC_Os05g49310
Target Sequence 
GAGGAGCACACGCTCATCGTCGAGCTACAGGCCAGATGGGGCAACAGGTGGTCCAAGATTGCAAGGTACCTTCCTGGCCG
GACCGACAACGAGGTCAAGAACTTCTGGAGGACCAAGATACAGAAGAAGCACAGGAAAAGCACTGACGGAATTTACGCGA
CGACGACGAGCGAAAGCATCATGCCTGCGGCTACAGTGCACCAGAACACGGTGGCCGAGGACCAAGGCAGCAGCAGCGTC
TCCGGCCGGACCACCACCGCCACCGTCGCCGTCACGCAGGAGTACGCCACTGAGGCGCCGCCGCCGAGCGGCATGAGTAG
TGGTAGCTACTTGGACCAGCTGCAGCCAGGCTACGCGAGCTCAATCCATGGAGGACAAGATGGCGGTGCTGCTGCCGCCG
CCGCTGGTGACGTCGTCGTCTCCGACGAGTTCTTGGCAGCGTCGAGCGACAACTTCTGGGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27380.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis