Browse Element(s) Details


OsAffx.27381.1.S1_at

Description tigr:9633.m04629
TID=OsAffx.27381.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4939011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49310OsAffx.27380.1.S1_at11/115+28213403..28215056Transcription factor MYB21, putative
LOC_Os05g49320OsAffx.4662.1.S1_at11/115+28216068..2821680950S ribosomal protein L12-1, chloroplast precursor, putative, expressed
LOC_Os05g49320Os.7971.1.S1_x_at1/115+28216068..2821680950S ribosomal protein L12-1, chloroplast precursor, putative, expressed
LOC_Os05g49330NANA5+28217863..28218222hypothetical protein
LOC_Os05g49340NANA5+28221357..28221863hypothetical protein
LOC_Os05g49350Os.47971.1.A1_at11/115+28223817..28224783expressed protein
LOC_Os05g49360NANA5+28226592..28227075hypothetical protein
LOC_Os05g49370Os.50975.1.S1_at11/115+28227633..28228661expressed protein
LOC_Os05g49380Os.17122.1.S1_at11/115+28231795..28235367Protease Do-like 1, chloroplast precursor, putative, expressed
LOC_Os05g49390OsAffx.27381.1.S1_at11/115+28236893..28242625hypothetical protein
LOC_Os05g49400OsAffx.15164.1.S1_at11/115+28244147..28245511F-box domain containing protein
LOC_Os05g49410Os.49345.1.S1_at10/115+28246150..28247425expressed protein
LOC_Os05g49420Os.19553.1.S1_at11/115+28251474..28256334G-box binding factor 1, putative, expressed
LOC_Os05g49430Os.33445.1.A1_at11/115+28259281..28261831Possible apospory-associated protein C, putative, expressed
LOC_Os05g49440Os.2250.1.S1_a_at11/115+28263471..28264618secreted protein, putative, expressed
LOC_Os05g49450OsAffx.15165.1.S1_at11/115+28265893..28267203F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27381.1.S1_at--245--5911Chr05:28238375..28238399 (25 bp)
GAGCTCTCGTAGATGACATTCCTCA
LOC_Os05g49390
OsAffx.27381.1.S1_at--302--6331Chr05:28237933..28237957 (25 bp)
GATGCAAGTCAGCTTCACACAACAA
LOC_Os05g49390
OsAffx.27381.1.S1_at--969--9551Chr05:28237897..28237921 (25 bp)
TCTTCTTTTTGAGTCCTCCACAAAG
LOC_Os05g49390
OsAffx.27381.1.S1_at--147--7651Chr05:28237798..28237822 (25 bp)
GGGATGCTACAACTGTGCTGTACAT
LOC_Os05g49390
OsAffx.27381.1.S1_at--177--9131Chr05:28237783..28237807 (25 bp)
TGCTGTACATTTCACCCGCATGGAA
LOC_Os05g49390
OsAffx.27381.1.S1_at--845--271Chr05:28237742..28237766 (25 bp)
ATATGGATGGCCGTTCTGTCTCCGA
LOC_Os05g49390
OsAffx.27381.1.S1_at--1091--1311Chr05:28237711..28237735 (25 bp)
AGAGGAGTGTTACCTGGACTGTCAT
LOC_Os05g49390
OsAffx.27381.1.S1_at--407--10571Chr05:28237623..28237647 (25 bp)
TTCTATGAAGTTTCAGGCCTCCTGC
LOC_Os05g49390
OsAffx.27381.1.S1_at--467--891Chr05:28237609..28237633 (25 bp)
AGGCCTCCTGCCTGAGTTGAGAATC
LOC_Os05g49390
OsAffx.27381.1.S1_at--210--10331Chr05:28237270..28237294 (25 bp)
TTTCAGTTCAATGCCCGTCTGTGTC
LOC_Os05g49390
OsAffx.27381.1.S1_at--404--10451Chr05:28237231..28237255 (25 bp)
TTACCACCGCAGATCCAGGGCAAAT
LOC_Os05g49390
Target Sequence 
GAGCTCTCGTAGATGACATTCCTCATCATAGTTATGATGTTGGACATGTTGGAGGGGAGCCAAAAACAGTGACGGTGAAT
GTACAAGCTCTTATGGATGAGCTTCTATCTGAGATTGACTATTGGTGCTTAGAGAAGGATTATGAGAATTCAATGAATAT
GGTTTTGATGCAAGTCAGCTTCACACAACAAACAAATGATCTTCTTCTTTTTGAGTCCTCCACAAAGTGGGGATGCTACA
ACTGTGCTGTACATTTCACCCGCATGGAATGTAGCAAATCTATTTATATGGATGGCCGTTCTGTCTCCGAGTTTGAAGAG
GAGTGTTACCTGGACTGTCATGAGTGCAAGATCGCTGTAGGATACAAGCGTATGAAAGTGTGCAAATTACCACAGGTTCT
AAACTTCTATGAAGTTTCAGGCCTCCTGCCTGAGTTGAGAATCTTAAATCAGTTTCTAACTGCACACCTGCTTCACCTTT
CAGTTCAATGCCCGTCTGTGTCCACTAGGCCCTGCATTACCACCGCAGATCCAGGGCAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27381.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis