Browse Element(s) Details


OsAffx.27409.1.S1_at

Description tigr:9633.m04895
TID=OsAffx.27409.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to CRS2-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5180011/11peptidyl-tRNA hydrolase family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g51780Os.23058.1.S1_at11/115+29634938..29636421Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g51790Os.14983.1.S1_a_at11/115+29644885..29657503structural maintenance of chromosomes family protein, putative, expressed
LOC_Os05g51790Os.14983.1.S2_a_at11/115+29644885..29657503structural maintenance of chromosomes family protein, putative, expressed
LOC_Os05g51800OsAffx.27409.1.S1_at11/115+29659567..29662333peptidyl-tRNA hydrolase family protein, putative
LOC_Os05g51800OsAffx.27409.1.S1_x_at11/115+29659567..29662333peptidyl-tRNA hydrolase family protein, putative
LOC_Os05g51800Os.24682.1.A1_at2/115+29659567..29662333peptidyl-tRNA hydrolase family protein, putative
LOC_Os05g51810OsAffx.18284.3.S1_at9/115+29665047..29666047hypothetical protein
LOC_Os05g51820OsAffx.15202.1.S1_at11/115+29666475..29667253Helix-loop-helix DNA-binding domain containing protein
LOC_Os05g51830Os.8519.1.S1_a_at11/115+29670091..29671678Histone deacetylase 2b, putative, expressed
LOC_Os05g51840NANA5+29671797..29673033Histone deacetylase 2a, putative, expressed
LOC_Os05g51850Os.12748.2.S1_x_at11/115+29675947..29678145AT hook motif family protein, expressed
LOC_Os05g51850Os.12748.1.S1_at11/115+29675947..29678145AT hook motif family protein, expressed
LOC_Os05g51860OsAffx.4685.1.S1_at10/115+29679907..29683767hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0004045molecular_functionaminoacyl-tRNA hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27409.1.S1_at--387--2291Chr05:29661404..29661426 (23 bp)
AAAGGAATTGGATGTCCACCTGGCC
LOC_Os05g51800
OsAffx.27409.1.S1_at--915--9771Chr05:29661464..29661773 (25 bp)
TAAGACCAGTCTAGAACGGATTCAT
LOC_Os05g51800
OsAffx.27409.1.S1_at--332--5851Chr05:29661467..29661776 (25 bp)
GACCAGTCTAGAACGGATTCATATG
LOC_Os05g51800
OsAffx.27409.1.S1_at--1008--5451Chr05:29661477..29661786 (25 bp)
GAACGGATTCATATGACCAACAGTC
LOC_Os05g51800
OsAffx.27409.1.S1_at--194--3971Chr05:29661767..29661789 (23 bp)
CGGATTCATATGACCAACAGTCTAA
LOC_Os05g51800
OsAffx.27409.1.S1_at--74--8911Chr05:29661775..29661799 (25 bp)
TGACCAACAGTCTAAAACCCTGGTT
LOC_Os05g51800
OsAffx.27409.1.S1_at--403--9531Chr05:29661785..29661809 (25 bp)
TCTAAAACCCTGGTTATATCCTGCA
LOC_Os05g51800
OsAffx.27409.1.S1_at--412--231Chr05:29661800..29662216 (25 bp)
ATATCCTGCATATGTAAAGACCCTG
LOC_Os05g51800
OsAffx.27409.1.S1_at--124--9271Chr05:29661803..29662219 (25 bp)
TCCTGCATATGTAAAGACCCTGAAG
LOC_Os05g51800
OsAffx.27409.1.S1_at--516--751Chr05:29662203..29662278 (25 bp)
ATGTAAAGACCCTGAAGATTGATTC
LOC_Os05g51800
OsAffx.27409.1.S1_at--1056--2311Chr05:29662207..29662282 (25 bp)
AAAGACCCTGAAGATTGATTCAGCC
LOC_Os05g51800
Target Sequence 
AAAGGAATTGGATGTCCACCTGGCCAAATGGACCCCAAAGCTTTTGTGCTCCAGAAGTTTAATAAGACCAGTCTAGAACG
GATTCATATGACCAACAGTCTAAAACCCTGGTTATATCCTGCATATGTAAAGACCCTGAAGATTGATTCAGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27409.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis