Browse Element(s) Details


OsAffx.27454.1.S1_at

Description tigr:9634.m00357
TID=OsAffx.27454.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0444011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g04380Os.6080.1.S1_at11/116+1871647..1874910Glycine cleavage T-protein containing protein, expressed
LOC_Os06g04390Os.11342.1.S1_at11/116+1875621..1879228expressed protein
LOC_Os06g04390OsAffx.16554.1.S1_at1/116+1875621..1879228expressed protein
LOC_Os06g04400OsAffx.27453.1.S1_at11/116+1883183..1883512hypothetical protein
LOC_Os06g04410OsAffx.4718.1.S1_at11/116+1890152..1891189hypothetical protein
LOC_Os06g04420OsAffx.4719.1.S1_at11/116+1892930..1893307Lipoxygenase 2, putative
LOC_Os06g04430OsAffx.15260.1.S1_at11/116+1896434..1896853hypothetical protein
LOC_Os06g04440OsAffx.27454.1.S1_at11/116+1898595..1899626hypothetical protein
LOC_Os06g04450Os.7031.1.S1_at11/116+1899883..1907931SNARE-interacting protein KEULE, putative, expressed
LOC_Os06g04460Os.13555.1.S1_at11/116+1908682..1912018hypersensitive-induced reaction protein 4, putative, expressed
LOC_Os06g04470Os.22672.1.S1_at11/116+1913175..1917037expressed protein
LOC_Os06g04480Os.56019.1.S1_at11/116+1921430..1922594expressed protein
LOC_Os06g04490OsAffx.4720.1.S1_x_at11/116+1923874..1924299hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27454.1.S1_at--467--1851Chr06:1899040..1899064 (25 bp)
ACGAGTACGACGTGGGTGGCACAAA
LOC_Os06g04440
OsAffx.27454.1.S1_at--316--8251Chr06:1899129..1899153 (25 bp)
GGCAGGTTCTACTGCTTCCACACCG
LOC_Os06g04440
OsAffx.27454.1.S1_at--729--1791Chr06:1899156..1899180 (25 bp)
ACCGACTACGGCGTGCTGGACTTCT
LOC_Os06g04440
OsAffx.27454.1.S1_at--69--9971Chr06:1899360..1899384 (25 bp)
TACCGGATGGACTTCCGGAGGCGCA
LOC_Os06g04440
OsAffx.27454.1.S1_at--664--5811Chr06:1899478..1899502 (25 bp)
GACCCAACTGCGTCTACTGGACGAG
LOC_Os06g04440
OsAffx.27454.1.S1_at--16--9531Chr06:1899490..1899514 (25 bp)
TCTACTGGACGAGCCCGTACGATAA
LOC_Os06g04440
OsAffx.27454.1.S1_at--353--4531Chr06:1899502..1899526 (25 bp)
GCCCGTACGATAAATGCTTGCACGT
LOC_Os06g04440
OsAffx.27454.1.S1_at--522--9031Chr06:1899520..1899544 (25 bp)
TGCACGTGTGTGATATTGGCGCCAA
LOC_Os06g04440
OsAffx.27454.1.S1_at--815--6511Chr06:1899531..1899555 (25 bp)
GATATTGGCGCCAACGCCAGGAAAT
LOC_Os06g04440
OsAffx.27454.1.S1_at--339--11Chr06:1899562..1899586 (25 bp)
AGCCTTTTAAAGGACTCGCGAAGCT
LOC_Os06g04440
OsAffx.27454.1.S1_at--876--951Chr06:1899572..1899596 (25 bp)
AGGACTCGCGAAGCTGCCGCATAGA
LOC_Os06g04440
Target Sequence 
ACGAGTACGACGTGGGTGGCACAAACGTGAGGGTCGCCGGCGGCCACCGCTTCGTGCGGCGGTCCGTCGCCGGCCTGACG
GCGTGCCGCGGCAGGTTCTACTGCTTCCACACCGCCACCGACTACGGCGTGCTGGACTTCTCGCCGGCGCCGGTGTTCGG
CACGGTGCCGATGAGGGCGGTGGACATGGCGGAGAAGGTGGCGGCGGGGGAGGCCATGGCCAAGGCGTCCGTCCACACGC
TCGAGATCGGCGGCGAGCTCTACATGGCGTACATCTTCTTCCACGGCGACGACGGCAGCCGCGTCGTCGAAGTCGGCGTC
TACCGGATGGACTTCCGGAGGCGCAGGGCGGTGAGGGTGCGCAGCGTCGGCGACCGCGCCATCATCGCCGGCTCCAACAT
CGGCGGGTGGTGCCCCGCCGGCGGCGAGACGGGGCTGCGACCCAACTGCGTCTACTGGACGAGCCCGTACGATAAATGCT
TGCACGTGTGTGATATTGGCGCCAACGCCAGGAAATTGCGAGAGCCTTTTAAAGGACTCGCGAAGCTGCCGCATAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27454.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis