Browse Element(s) Details


OsAffx.27508.94.S1_s_at

Description gb:AK062277.1
DB_XREF= gi:32972295
TID=OsAffx.27508.94
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-100-B07, full insert sequence.
FL= gb:AK062277.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1766011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g17630Os.26870.1.S1_at9/119+10784209..10792850Receptor-like protein kinase 2, putative, expressed
LOC_Os09g17630Os.26870.2.A1_x_at9/119+10784209..10792850Receptor-like protein kinase 2, putative, expressed
LOC_Os09g17640NANA9+10795067..10795641hypothetical protein
LOC_Os09g17650OsAffx.29898.1.S1_at11/119+10797022..10797372expressed protein
LOC_Os09g17660OsAffx.27508.94.S1_s_at11/119+10800053..10801378expressed protein
LOC_Os09g17670OsAffx.17760.1.S1_at11/119+10803555..10803809hypothetical protein
LOC_Os09g17680Os.53645.1.S1_at11/119+10809134..10811497ATP-NAD kinase family protein, putative, expressed
LOC_Os09g17690NANA9+10820770..10821132hypothetical protein
LOC_Os09g17700NANA9+10825013..10825249hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27508.94.S1_s_at--806--9111Chr09:10801061..10801085 (25 bp)
TGCTGCTGCCGAACAAGCCGTACGA
LOC_Os09g17660
OsAffx.27508.94.S1_s_at--154--9131Chr09:10801124..10801148 (25 bp)
TGCTGGTGACCGTCGCCAAGCGCAA
LOC_Os09g17660
OsAffx.27508.94.S1_s_at--810--8351Chr09:10801160..10801184 (25 bp)
GGCGTGACAAGGTCGGAATCCCGAT
LOC_Os09g17660
OsAffx.27508.94.S1_s_at--59--9691Chr09:10801184..10801208 (25 bp)
TCACTCCGGCTCCAAGCAATGAGAA
LOC_Os09g17660
OsAffx.27508.94.S1_s_at--600--5171Chr09:10801199..10801223 (25 bp)
GCAATGAGAAAACCACTACCGCCAC
LOC_Os09g17660
OsAffx.27508.94.S1_s_at--969--4351Chr09:10801226..10801250 (25 bp)
GACAAACCGGTAGCGAGACCTAGCT
LOC_Os09g17660
OsAffx.27508.94.S1_s_at--980--4611Chr09:10801238..10801262 (25 bp)
GCGAGACCTAGCTATATATCTAATC
LOC_Os09g17660
OsAffx.27508.94.S1_s_at--978--2251Chr09:10801274..10801298 (25 bp)
AAATAGTTAAATGTCGCTCAGCGGA
LOC_Os09g17660
OsAffx.27508.94.S1_s_at--1000--5911Chr09:10801299..10801323 (25 bp)
GAGCTTAGTTACGAGATAGATCCAT
LOC_Os09g17660
OsAffx.27508.94.S1_s_at--950--6491Chr09:10801313..10801337 (25 bp)
GATAGATCCATGTGCCGTCGATCAA
LOC_Os09g17660
OsAffx.27508.94.S1_s_at--722--7211Chr09:10801329..10801353 (25 bp)
GTCGATCAATCTTGCTCCGAGAAAT
LOC_Os09g17660
Target Sequence 
TGCTGCTGCCGAACAAGCCGTACGACACGGCCAAGGTCGAGGCCGAGCTCACCTTCGGGACGCTGCTGGTGACCGTCGCC
AAGCGCAAGCCCCTGCAGGGGCGTGACAAGGTCGGAATCCCGATCACTCCGGCTCCAAGCAATGAGAAAACCACTACCGC
CACCGGACAAACCGGTAGCGAGACCTAGCTATATATCTAATCTTAAAAGTGGCAAATAGTTAAATGTCGCTCAGCGGAGA
GCTTAGTTACGAGATAGATCCATGTGCCGTCGATCAATCTTGCTCCGAGAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27508.94.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis