Browse Element(s) Details


OsAffx.27520.1.S1_at

Description tigr:9634.m00841
TID=OsAffx.27520.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0892011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g08890OsAffx.4774.1.S1_at11/116+4471701..4474022Ligand-gated ion channel family protein, expressed
LOC_Os06g08900OsAffx.27521.1.S1_at11/116+4480241..4486784Ligand-gated ion channel family protein
LOC_Os06g08910Os.27742.2.S1_a_at11/116+4488589..4492910Ligand-gated ion channel family protein, expressed
LOC_Os06g08910Os.27742.1.S1_at11/116+4488589..4492910Ligand-gated ion channel family protein, expressed
LOC_Os06g08910OsAffx.4776.1.S1_s_at2/116+4488589..4492910Ligand-gated ion channel family protein, expressed
LOC_Os06g08920OsAffx.27520.1.S1_at11/116+4496906..4498414hypothetical protein
LOC_Os06g08920OsAffx.21973.1.S1_at1/116+4496906..4498414hypothetical protein
LOC_Os06g08930OsAffx.27521.1.S1_at11/116+4499767..4501666Ligand-gated ion channel family protein
LOC_Os06g08940NANA6+4504108..4507416retrotransposon protein, putative, unclassified
LOC_Os06g08950NANA6+4508033..4514188retrotransposon protein, putative, unclassified
LOC_Os06g08960OsAffx.15322.1.S1_x_at11/116+4515894..4523961hypothetical protein
LOC_Os06g08960OsAffx.13740.1.S1_at1/116+4515894..4523961hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27520.1.S1_at--279--9031Chr06:4497016..4497040 (25 bp)
TGCAAATCCTCACCCGGCGGCTGTG
LOC_Os06g08920
OsAffx.27520.1.S1_at--35--6871Chr06:4497754..4497778 (25 bp)
GTTTGGCTCCGATAACCTCATCGAA
LOC_Os06g08920
OsAffx.27520.1.S1_at--518--351Chr06:4497765..4497789 (25 bp)
ATAACCTCATCGAAAGAAACCAGCT
LOC_Os06g08920
OsAffx.27520.1.S1_at--695--5551Chr06:4497780..4497804 (25 bp)
GAAACCAGCTTTTGTCAGAAGAATC
LOC_Os06g08920
OsAffx.27520.1.S1_at--841--5051Chr06:4497860..4497884 (25 bp)
GCAGCAGGGTTCATCGCCAGAGACG
LOC_Os06g08920
OsAffx.27520.1.S1_at--327--8371Chr06:4497904..4497928 (25 bp)
GGCGTCGGCGAGGAAACCACGACCA
LOC_Os06g08920
OsAffx.27520.1.S1_at--851--9211Chr06:4497969..4497993 (25 bp)
TCCACGTCGCCGCAGTGAAGGATGA
LOC_Os06g08920
OsAffx.27520.1.S1_at--643--2411Chr06:4498005..4498290 (25 bp)
AAAAGCTCCGGCATAGGGCCATTGT
LOC_Os06g08920
OsAffx.27520.1.S1_at--498--1091Chr06:4498280..4498304 (25 bp)
AGGGCCATTGTGCATGCCATTCTGC
LOC_Os06g08920
OsAffx.27520.1.S1_at--500--31Chr06:4498308..4498332 (25 bp)
ATTGGATGAGGCCTTTCATCACCAC
LOC_Os06g08920
OsAffx.27520.1.S1_at--231--2532Chr06:4498352..4498376 (25 bp)
AACTTTTTGGACAGCTTGATCAGGT
LOC_Os06g08920
Target Sequence 
TGCAAATCCTCACCCGGCGGCTGTGTCTCTCACTCTCTCGGCTACCTCGTTTGGCTCCGATAACCTCATCGAAAGAAACC
AGCTTTTGTCAGAAGAATCGTGGGAAAAACAAGAGAGGAAGGGTAGAGACTCGAAGGAGGAGGACGAGGCGGCGGCAGCA
GGGTTCATCGCCAGAGACGGCGAGGAAGCGGCGGCCAGGGCGTCGGCGAGGAAACCACGACCACGGCCATCCTCACGCCG
CGCCCCGACGAGCCGCACCGTTGTCCACGTCGCCGCAGTGAAGGATGAGATGGCGCAACAAAAGCTCCGGCATAGGGCCA
TTGTGCATGCCATTCTGCATTATTGGATGAGGCCTTTCATCACCACCCTGAAACCCATCGTTTCCAACTTTTTGGACAGC
TTGATCAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27520.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis