Browse Element(s) Details


OsAffx.27531.1.S1_at

Description tigr:9634.m00908
TID=OsAffx.27531.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0952011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g09470OsAffx.32056.1.S1_x_at11/116+4818447..4823823transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g09470OsAffx.32056.1.S1_at11/116+4818447..4823823transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g09480OsAffx.10637.3.S1_s_at10/116+4825817..4829152transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g09480OsAffx.10637.1.S1_s_at9/116+4825817..4829152transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g09480OsAffx.10637.4.S1_s_at7/116+4825817..4829152transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g09490OsAffx.27771.1.S1_x_at11/116+4832721..4834950AT hook motif-containing protein, putative
LOC_Os06g09490OsAffx.27771.2.S1_s_at11/116+4832721..4834950AT hook motif-containing protein, putative
LOC_Os06g09500NANA6+4835639..4836148transposon protein, putative, unclassified
LOC_Os06g09510OsAffx.27530.1.S1_at11/116+4836766..4837236hypothetical protein
LOC_Os06g09520OsAffx.27531.1.S1_at11/116+4838629..4839129hypothetical protein
LOC_Os06g09530OsAffx.15333.1.S1_at11/116+4841375..4842370hypothetical protein
LOC_Os06g09540Os.34575.1.S1_at10/116+4843552..4853691SAC domain protein 3, putative, expressed
LOC_Os06g09550OsAffx.27538.1.S1_at11/116+4861981..4862639hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27531.1.S1_at--705--2151Chr06:4838702..4838726 (25 bp)
ACAGCCGAGATTGTACCTGCGACAA
LOC_Os06g09520
OsAffx.27531.1.S1_at--611--9151Chr06:4838719..4838743 (25 bp)
TGCGACAAGTGCCATTTCCTTCTGG
LOC_Os06g09520
OsAffx.27531.1.S1_at--926--10451Chr06:4838760..4838784 (25 bp)
TTACGCTTCCTGCAAATACATGATC
LOC_Os06g09520
OsAffx.27531.1.S1_at--686--711Chr06:4838779..4838803 (25 bp)
ATGATCCACAAGGTATGCCCCGTGC
LOC_Os06g09520
OsAffx.27531.1.S1_at--921--8691Chr06:4838867..4838891 (25 bp)
TGTGCGGTCGTTTGACGTCCATCTA
LOC_Os06g09520
OsAffx.27531.1.S1_at--809--1491Chr06:4838914..4838938 (25 bp)
AGCAAATGCTACTGTGACATCGACA
LOC_Os06g09520
OsAffx.27531.1.S1_at--838--8951Chr06:4838928..4838952 (25 bp)
TGACATCGACAACTGCGGGCTTCTT
LOC_Os06g09520
OsAffx.27531.1.S1_at--969--9911Chr06:4838971..4838995 (25 bp)
TACGGATGCCTTCCCTGCAGATACG
LOC_Os06g09520
OsAffx.27531.1.S1_at--843--9031Chr06:4838986..4839010 (25 bp)
TGCAGATACGCTGTCCACAAGGTCT
LOC_Os06g09520
OsAffx.27531.1.S1_at--580--3211Chr06:4839015..4839039 (25 bp)
CAAGGGTCCTCTTCGCAACGAAGTA
LOC_Os06g09520
OsAffx.27531.1.S1_at--737--6391Chr06:4839075..4839099 (25 bp)
GATCGGCTGCATTTTCAGCGGGTTA
LOC_Os06g09520
Target Sequence 
ACAGCCGAGATTGTACCTGCGACAAGTGCCATTTCCTTCTGGCCGGCTACAGCTGCCCTTACGCTTCCTGCAAATACATG
ATCCACAAGGTATGCCCCGTGCCGCCGGCAAGTGTACAGGGCGGTTCCGCCTCCCAGTCCCAAGACAGCGGCCCTCCCTG
CGGGCTGTGCGGTCGTTTGACGTCCATCTACGACTACACCAACTCCACCTGCAGCAAATGCTACTGTGACATCGACAACT
GCGGGCTTCTTCTCGCCGGCTACATCGTCTACGGATGCCTTCCCTGCAGATACGCTGTCCACAAGGTCTGCCCCAAGGGT
CCTCTTCGCAACGAAGTAATCAACGGAGCGGTCAGAGGAACGGTCAGCGGAGTGATCGGCTGCATTTTCAGCGGGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27531.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis