Browse Element(s) Details

OsAffx.27538.1.S1_at

Description

tigr:9634.m00912
TID=OsAffx.27538.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g09550	11/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g09510	OsAffx.27530.1.S1_at	11/11	6	+	4836766..4837236	hypothetical protein
LOC_Os06g09520	OsAffx.27531.1.S1_at	11/11	6	+	4838629..4839129	hypothetical protein
LOC_Os06g09530	OsAffx.15333.1.S1_at	11/11	6	+	4841375..4842370	hypothetical protein
LOC_Os06g09540	Os.34575.1.S1_at	10/11	6	+	4843552..4853691	SAC domain protein 3, putative, expressed
LOC_Os06g09550	OsAffx.27538.1.S1_at	11/11	6	+	4861981..4862639	hypothetical protein
LOC_Os06g09560	Os.5817.1.S1_at	11/11	6	+	4866844..4869145	DnaJ domain containing protein, expressed
LOC_Os06g09570	Os.14676.2.S1_at	11/11	6	+	4869882..4873712	nucleolar GTP-binding protein 1, putative, expressed
LOC_Os06g09570	Os.14676.1.S1_a_at	11/11	6	+	4869882..4873712	nucleolar GTP-binding protein 1, putative, expressed
LOC_Os06g09580	Os.35344.3.S1_x_at	9/11	6	+	4874079..4876893	Transposable element protein, putative, MuDR
LOC_Os06g09580	OsAffx.22940.5.S1_at	7/11	6	+	4874079..4876893	Transposable element protein, putative, MuDR
LOC_Os06g09580	Os.35344.18.S1_x_at	6/11	6	+	4874079..4876893	Transposable element protein, putative, MuDR
LOC_Os06g09580	OsAffx.22940.5.S1_x_at	5/11	6	+	4874079..4876893	Transposable element protein, putative, MuDR
LOC_Os06g09600	OsAffx.27536.1.S1_x_at	11/11	6	+	4884948..4885654	expressed protein
LOC_Os06g09610	Os.22674.1.S1_at	10/11	6	+	4887550..4889730	AhpC/TSA family protein, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.27538.1.S1_at--223--579	1	Chr06:4862540..4862564 (25 bp)	GACGACGACAACGATCACTATCACG	LOC_Os06g09550
OsAffx.27538.1.S1_at--846--561	1	Chr06:4862534..4862558 (25 bp)	GACAACGATCACTATCACGAAGACG	LOC_Os06g09550
OsAffx.27538.1.S1_at--148--411	1	Chr06:4862517..4862541 (25 bp)	CGAAGACGAAGATAAGCCCCTGCTC	LOC_Os06g09550
OsAffx.27538.1.S1_at--841--435	1	Chr06:4862212..4862236 (25 bp)	CCACTGCCGACGACAGCGGACGTGG	LOC_Os06g09550
OsAffx.27538.1.S1_at--897--409	1	Chr06:4862148..4862172 (25 bp)	CGACGGCGTACCTGGTTGGTCATGC	LOC_Os06g09550
OsAffx.27538.1.S1_at--207--697	1	Chr06:4862141..4862165 (25 bp)	GTACCTGGTTGGTCATGCCGGTGTT	LOC_Os06g09550
OsAffx.27538.1.S1_at--350--427	1	Chr06:4862138..4862162 (25 bp)	CCTGGTTGGTCATGCCGGTGTTCCG	LOC_Os06g09550
OsAffx.27538.1.S1_at--475--1	1	Chr06:4862082..4862106 (25 bp)	AGGAGTTCGGGTGAATTCGAGTACA	LOC_Os06g09550
OsAffx.27538.1.S1_at--485--521	1	Chr06:4862070..4862094 (25 bp)	GAATTCGAGTACAGCGACGGCGAGC	LOC_Os06g09550
OsAffx.27538.1.S1_at--1103--869	1	Chr06:4862039..4862063 (25 bp)	TGTCCATTCCCTGCGACACGGATGA	LOC_Os06g09550
OsAffx.27538.1.S1_at--395--193	1	Chr06:4862022..4862046 (25 bp)	ACGGATGACTTCAAGTACATCGTCG	LOC_Os06g09550

Target Sequence

GACGACGACAACGATCACTATCACGAAGACGAAGATAAGCCCCTGCTCCCGCCGATCCGCCACTGCCGACGACAGCGGAC
GTGGGTGCGGCGGCGGAGACGGAGCGGCGGCGGTTCGTGGTGCCGACGGCGTACCTGGTTGGTCATGCCGGTGTTCCGGC
GGCTGCTGGAGAAGGGCAGAAAGCGGAGTAGGAGTTCGGGTGAATTCGAGTACAGCGACGGCGAGCTCACCATGTCCATT
CCCTGCGACACGGATGACTTCAAGTACATCGTCG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis