Browse Element(s) Details


Os.22674.1.S1_at

Description gb:AK059845.1
DB_XREF= gi:32969863
TID=Os.22674.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22674 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013157F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-206-E10, full insert sequence.
FL= gb:AK059845.1 gb:AK068635.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0961010/11AhpC/TSA family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g09550OsAffx.27538.1.S1_at11/116+4861981..4862639hypothetical protein
LOC_Os06g09560Os.5817.1.S1_at11/116+4866844..4869145DnaJ domain containing protein, expressed
LOC_Os06g09570Os.14676.2.S1_at11/116+4869882..4873712nucleolar GTP-binding protein 1, putative, expressed
LOC_Os06g09570Os.14676.1.S1_a_at11/116+4869882..4873712nucleolar GTP-binding protein 1, putative, expressed
LOC_Os06g09580Os.35344.3.S1_x_at9/116+4874079..4876893Transposable element protein, putative, MuDR
LOC_Os06g09580OsAffx.22940.5.S1_at7/116+4874079..4876893Transposable element protein, putative, MuDR
LOC_Os06g09580Os.35344.18.S1_x_at6/116+4874079..4876893Transposable element protein, putative, MuDR
LOC_Os06g09580OsAffx.22940.5.S1_x_at5/116+4874079..4876893Transposable element protein, putative, MuDR
LOC_Os06g09600OsAffx.27536.1.S1_x_at11/116+4884948..4885654expressed protein
LOC_Os06g09610Os.22674.1.S1_at10/116+4887550..4889730AhpC/TSA family protein, expressed
LOC_Os06g09620OsAffx.27533.1.S1_at11/116+4891310..4894722expressed protein
LOC_Os06g09630Os.7644.1.S1_at11/116+4896181..48995653-oxoacyl-synthase I, chloroplast precursor, putative, expressed
LOC_Os06g09640NANA6+4901972..4904936retrotransposon protein, putative, unclassified
LOC_Os06g09650NANA6+4905808..4911549retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016209molecular_functionantioxidant activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22674.1.S1_at--616--7971Chr06:4889134..4889158 (25 bp)
GGATGCACCAAGCAGGCCTGCGCCT
LOC_Os06g09610
Os.22674.1.S1_at--176--4211Chr06:4889108..4889132 (25 bp)
CCGCGACTCCTACGAGAAGTTCAAG
LOC_Os06g09610
Os.22674.1.S1_at--250--4531NONE
GCCGCCTCCCACAAGGAGTTCAAGA
NONE
Os.22674.1.S1_at--1007--2731Chr06:4887980..4888004 (25 bp)
AAGAAGTACAAGCTGCCGTTCACGC
LOC_Os06g09610
Os.22674.1.S1_at--129--5311Chr06:4887883..4887907 (25 bp)
GAAGGCAGACGTACGTGCTCGACAA
LOC_Os06g09610
Os.22674.1.S1_at--244--10491Chr06:4887745..4887769 (25 bp)
TTAACTACAATCTCTCATGTATGAT
LOC_Os06g09610
Os.22674.1.S1_at--88--9531Chr06:4887733..4887757 (25 bp)
TCTCATGTATGATCCATCACAGTAT
LOC_Os06g09610
Os.22674.1.S1_at--110--4851Chr06:4887593..4887617 (25 bp)
GCTAGCTCTGAATTTTGCCGTAAGG
LOC_Os06g09610
Os.22674.1.S1_at--753--9171Chr06:4887578..4887602 (25 bp)
TGCCGTAAGGCACTCTGATTTTCTC
LOC_Os06g09610
Os.22674.1.S1_at--652--5111Chr06:4887569..4887593 (25 bp)
GCACTCTGATTTTCTCTACTTGGAT
LOC_Os06g09610
Os.22674.1.S1_at--946--10291Chr06:4887558..4887582 (25 bp)
TTCTCTACTTGGATTAATTTACTAA
LOC_Os06g09610
Target Sequence 
GGATGCACCAAGCAGGCCTGCGCCTTCCGCGACTCCTACGAGAAGTTCAAGAAGGCCGGCGCCGAGGTCATCGGCATCAG
CGGCGACGACGCCGCCTCCCACAAGGAGTTCAAGAAGAAGTACAAGCTGCCGTTCACGCTGCTGAGCGACGAGGGGAACA
AGGTGAGGAAGGAGTGGGGTGTGCCGGCTGACCTGTTCGGGACGCTGCCGGGAAGGCAGACGTACGTGCTCGACAAGAAC
GGCGTCGTCCAGTACATCTACAACAACCAGTTCCAGCCCGAGAAGCACATTGGCGAGACCCTCAAGATCCTCCAGAGCCT
CTGATTCTCTTCTTCTTCTTCCTCCTNTTTTAACTACAATCTCTCATGTATGATCCATCACAGTATACCGAGAAATTAAT
CCATCTGTTAATCTCTTCTCGATCGTTTTTCTCCCTCGGCATGTGTATAGCTAGTGTATCTGTAACTCTGTGAGTATATA
TACAGTCAAAATCGGTGGGCTGCTAGCTCTGAATTTTGCCGTAAGGCACTCTGATTTTCTCTACTTGGATTAATTTACTA
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22674.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis