Browse Element(s) Details


OsAffx.27533.1.S1_at

Description tigr:9634.m00919
TID=OsAffx.27533.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0962011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g09560Os.5817.1.S1_at11/116+4866844..4869145DnaJ domain containing protein, expressed
LOC_Os06g09570Os.14676.2.S1_at11/116+4869882..4873712nucleolar GTP-binding protein 1, putative, expressed
LOC_Os06g09570Os.14676.1.S1_a_at11/116+4869882..4873712nucleolar GTP-binding protein 1, putative, expressed
LOC_Os06g09580Os.35344.3.S1_x_at9/116+4874079..4876893Transposable element protein, putative, MuDR
LOC_Os06g09580OsAffx.22940.5.S1_at7/116+4874079..4876893Transposable element protein, putative, MuDR
LOC_Os06g09580Os.35344.18.S1_x_at6/116+4874079..4876893Transposable element protein, putative, MuDR
LOC_Os06g09580OsAffx.22940.5.S1_x_at5/116+4874079..4876893Transposable element protein, putative, MuDR
LOC_Os06g09600OsAffx.27536.1.S1_x_at11/116+4884948..4885654expressed protein
LOC_Os06g09610Os.22674.1.S1_at10/116+4887550..4889730AhpC/TSA family protein, expressed
LOC_Os06g09620OsAffx.27533.1.S1_at11/116+4891310..4894722expressed protein
LOC_Os06g09630Os.7644.1.S1_at11/116+4896181..48995653-oxoacyl-synthase I, chloroplast precursor, putative, expressed
LOC_Os06g09640NANA6+4901972..4904936retrotransposon protein, putative, unclassified
LOC_Os06g09650NANA6+4905808..4911549retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27533.1.S1_at--373--9731Chr06:4892052..4892076 (25 bp)
TCAATAGCCTTCTGATCCCGAGCAC
LOC_Os06g09620
OsAffx.27533.1.S1_at--332--1331Chr06:4891953..4891977 (25 bp)
AGAGGTTCCTGACCTTCGGCAAGAA
LOC_Os06g09620
OsAffx.27533.1.S1_at--737--4631Chr06:4891863..4891887 (25 bp)
GCGATTCCGGCGTCAGGCAGAGAAT
LOC_Os06g09620
OsAffx.27533.1.S1_at--95--5051Chr06:4891847..4891871 (25 bp)
GCAGAGAATCTGCTCCTCCGATGCT
LOC_Os06g09620
OsAffx.27533.1.S1_at--1100--8711Chr06:4891607..4891820 (25 bp)
TGTCATCCCTGCACACGTAACAGAA
LOC_Os06g09620
OsAffx.27533.1.S1_at--759--2971Chr06:4891583..4891607 (25 bp)
AATGGTTATGTGCAGTTCGATCCTT
LOC_Os06g09620
OsAffx.27533.1.S1_at--274--5031Chr06:4891572..4891596 (25 bp)
GCAGTTCGATCCTTGCAAAGCTGTG
LOC_Os06g09620
OsAffx.27533.1.S1_at--784--9251Chr06:4891537..4891561 (25 bp)
TCCTGCAAGGCCTGTACTACTGAAG
LOC_Os06g09620
OsAffx.27533.1.S1_at--62--2931Chr06:4891515..4891539 (25 bp)
AAGGAGCTCATTTCATCGGCAAAAT
LOC_Os06g09620
OsAffx.27533.1.S1_at--960--2091Chr06:4891378..4891402 (25 bp)
ACATCGTTCGTTCTTCTCGTTCTCA
LOC_Os06g09620
OsAffx.27533.1.S1_at--936--9391Chr06:4891362..4891386 (25 bp)
TCGTTCTCATCGTTCAAGTCCAGAG
LOC_Os06g09620
Target Sequence 
TCAATAGCCTTCTGATCCCGAGCACCACGACGAGCAGCAGCAGCAGCGTTGCTTGTCCGGTCACCGTGCAGTCGCCGATG
GAGGCGGTGGCGGGGTTCAAGAGGTTCCTGACCTTCGGCAAGAAGAACGCCGCCGCCGCCGTGGCTCCGCCGGCGGATGA
TTCCGGCGTCGGCCATGGATGGCCGTCAGGCGATTCCGGCGTCAGGCAGAGAATCTGCTCCTCCGATGCTGCTTCAGATG
ATTCAGACAACAGCTATGTCATCCCTGCACACGTAACAGAAATGGTTATGTGCAGTTCGATCCTTGCAAAGCTGTGTGCC
TTGTTCTCCTGCAAGGCCTGTACTACTGAAGGAGCTCATTTCATCGGCAAAATCCCCACGAGCACATCGTTCGTTCTTCT
CGTTCTCATCGTTCAAGTCCAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27533.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis