Browse Element(s) Details


Os.5817.1.S1_at

Description gb:AK111076.1
DB_XREF= gi:32996285
TID=Os.5817.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5817 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-175-E11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-175-E11, full insert sequence.
FL= gb:AK111076.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0956011/11DnaJ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g09530OsAffx.15333.1.S1_at11/116+4841375..4842370hypothetical protein
LOC_Os06g09540Os.34575.1.S1_at10/116+4843552..4853691SAC domain protein 3, putative, expressed
LOC_Os06g09550OsAffx.27538.1.S1_at11/116+4861981..4862639hypothetical protein
LOC_Os06g09560Os.5817.1.S1_at11/116+4866844..4869145DnaJ domain containing protein, expressed
LOC_Os06g09570Os.14676.2.S1_at11/116+4869882..4873712nucleolar GTP-binding protein 1, putative, expressed
LOC_Os06g09570Os.14676.1.S1_a_at11/116+4869882..4873712nucleolar GTP-binding protein 1, putative, expressed
LOC_Os06g09580Os.35344.3.S1_x_at9/116+4874079..4876893Transposable element protein, putative, MuDR
LOC_Os06g09580OsAffx.22940.5.S1_at7/116+4874079..4876893Transposable element protein, putative, MuDR
LOC_Os06g09580Os.35344.18.S1_x_at6/116+4874079..4876893Transposable element protein, putative, MuDR
LOC_Os06g09580OsAffx.22940.5.S1_x_at5/116+4874079..4876893Transposable element protein, putative, MuDR
LOC_Os06g09600OsAffx.27536.1.S1_x_at11/116+4884948..4885654expressed protein
LOC_Os06g09610Os.22674.1.S1_at10/116+4887550..4889730AhpC/TSA family protein, expressed
LOC_Os06g09620OsAffx.27533.1.S1_at11/116+4891310..4894722expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5817.1.S1_at--1136--3631Chr06:4867778..4867802 (25 bp)
CTTCGAGGAGTTGCAGCAGCTGTTC
LOC_Os06g09560
Os.5817.1.S1_at--171--5071Chr06:4867793..4867817 (25 bp)
GCAGCTGTTCGTGGACATGTTCCAG
LOC_Os06g09560
Os.5817.1.S1_at--801--2871Chr06:4867926..4867950 (25 bp)
AAGGGCGTGAACAAGCGGTGCTCAC
LOC_Os06g09560
Os.5817.1.S1_at--740--8531Chr06:4867966..4867990 (25 bp)
TGGACTCCGGTTTGAGCAGCCTGCT
LOC_Os06g09560
Os.5817.1.S1_at--739--191Chr06:4867995..4868016 (22 bp)
ATTTCGGGCTTCTGTTTCGAGGCGC
LOC_Os06g09560
Os.5817.1.S1_at--176--4271Chr06:4868898..4868922 (25 bp)
CCGGCGAGCCACAACGTGTAGTTGG
LOC_Os06g09560
Os.5817.1.S1_at--665--8831Chr06:4868927..4868951 (25 bp)
TGATCAGCCGAAGCAACGTACCAGA
LOC_Os06g09560
Os.5817.1.S1_at--876--2811Chr06:4868954..4868978 (25 bp)
AAGATTTTGATTGCCCAGTGCTCGC
LOC_Os06g09560
Os.5817.1.S1_at--106--4791Chr06:4868973..4868997 (25 bp)
GCTCGCCACGAAGACTGACATTTTT
LOC_Os06g09560
Os.5817.1.S1_at--131--10251Chr06:4869020..4869044 (25 bp)
TTTGTTCATGGCTGTACTGTAAATA
LOC_Os06g09560
Os.5817.1.S1_at--562--5491Chr06:4869047..4869071 (25 bp)
GAACACGCTCCAGAATTTGGTTGAA
LOC_Os06g09560
Target Sequence 
CTTCGAGGAGTTGCAGCAGCTGTTCGTGGACATGTTCCAGGACGACATCGACGCCGGCCTCTGCCAGTCGACGCCGCCGC
CGCCGTCATGGCCGTCGCCTCCGGCGGCCGCCAATGCACGATCGCCGGCGGCGGCGGCGACTTCACGCAAGGGCGTGAAC
AAGCGGTGCTCACCGGCGGCGATGGACATGGACTCCGGTTTGAGCAGCCTGCTGGGCATTTCGGGCTTCTGTTTCGAGGC
GCCATGGACGTCGCAGGACGCGAGCACTGCCGCCGGCGGTGGCGGCGGCAAGAGGAGAAAGCAGAGGCCGCCGCCGGCGA
GCCACAACGTGTAGTTGGATGTTGATCAGCCGAAGCAACGTACCAGAAGAAGATTTTGATTGCCCAGTGCTCGCCACGAA
GACTGACATTTTTTTNTTTTTCTTCATTTGTTCTTTTTGTTCATGGCTGTACTGTAAATAGAGAACACGCTCCAGAATTT
GGTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5817.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis