Browse Element(s) Details


OsAffx.27539.1.S1_at

Description tigr:9634.m00947
TID=OsAffx.27539.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0980011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g09760NANA6+4971238..4971774AP2 domain containing protein
LOC_Os06g09770NANA6+4973619..4976602hypothetical protein
LOC_Os06g09780NANA6+4978156..4979997retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g09790OsAffx.15337.1.S1_at11/116+4990220..4991150AP2 domain containing protein, expressed
LOC_Os06g09800OsAffx.27539.1.S1_at11/116+4994259..4994861hypothetical protein
LOC_Os06g09810OsAffx.15338.1.S1_at11/116+4997065..4997688AP2 domain containing protein
LOC_Os06g09820OsAffx.15339.1.S1_at11/116+5001346..5003755Protein of unknown function containing protein, expressed
LOC_Os06g09820OsAffx.15339.1.S1_s_at11/116+5001346..5003755Protein of unknown function containing protein, expressed
LOC_Os06g09830Os.9561.1.S1_at11/116+5004425..5007057Protein of unknown function containing protein, expressed
LOC_Os06g09840Os.16603.1.S1_at11/116+5007202..5009735expressed protein
LOC_Os06g09850Os.9168.1.S1_at11/116+5011408..501565325.3 kDa vesicle transport protein, putative, expressed
LOC_Os06g09850OsAffx.25746.1.S1_x_at2/116+5011408..501565325.3 kDa vesicle transport protein, putative, expressed
LOC_Os06g09860Os.8116.1.S1_at11/116+5017089..5019390Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27539.1.S1_at--543--4211Chr06:4994803..4994827 (25 bp)
CCGCCTTGACGACGTGCACGACGAA
LOC_Os06g09800
OsAffx.27539.1.S1_at--905--5751Chr06:4994793..4994817 (25 bp)
GACGTGCACGACGAACGGCAGACGA
LOC_Os06g09800
OsAffx.27539.1.S1_at--672--5091Chr06:4994751..4994775 (25 bp)
GCACGCAGAGGCATCGTCGCCTGCT
LOC_Os06g09800
OsAffx.27539.1.S1_at--424--4812Chr06:4994652..4994676 (25 bp)
GCTCGTGCGGCTCGAACCAGCCGTA
LOC_Os06g09800
OsAffx.27539.1.S1_at--278--2651Chr06:4994638..4994662 (25 bp)
AACCAGCCGTAGCTCGAGGCGCTGA
LOC_Os06g09800
OsAffx.27539.1.S1_at--580--5551Chr06:4994600..4994624 (25 bp)
GACAAGGCCGTTGCGGTAGCCCCAG
LOC_Os06g09800
OsAffx.27539.1.S1_at--71--632Chr06:4994548..4994572 (25 bp)
ATGCTGTAGACGTGGCCGGGCCACC
LOC_Os06g09800
OsAffx.27539.1.S1_at--117--791Chr06:4994523..4994547 (25 bp)
ATGGGTGGGACTTGACCTTGCCCTA
LOC_Os06g09800
OsAffx.27539.1.S1_at--371--4311Chr06:4994508..4994532 (25 bp)
CCTTGCCCTAGATCATGTCGCCGAA
LOC_Os06g09800
OsAffx.27539.1.S1_at--1161--6431Chr06:4994498..4994522 (25 bp)
GATCATGTCGCCGAACCGGACGTCG
LOC_Os06g09800
OsAffx.27539.1.S1_at--624--4011Chr06:4994289..4994502 (25 bp)
CGTCGCGTGCACGATGAGACATGTG
LOC_Os06g09800
Target Sequence 
CCGCCTTGACGACGTGCACGACGAACGGCAGACGACGCCTCCACCTCGCTGCGCACGCAGAGGCATCGTCGCCTGCTCTC
TGCCGCCCCGCTCACCGCCGCCTCCCGCTCGCCGCCACCGCGGCCGAGCCCGCCACTGTCGTCGCCGTCGAGCTCGTGCG
GCTCGAACCAGCCGTAGCTCGAGGCGCTGAAGAAGGCGACGAGGACAAGGCCGTTGCGGTAGCCCCAGCAAACCTCCCCG
TCGTTGGGGAGGGTGATGCTGTAGACGTGGCCGGGCCACCATGGGTGGGACTTGACCTTGCCCTAGATCATGTCGCCGAA
CCGGACGTCGCGTGCACGATGAGACATGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27539.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis