Browse Element(s) Details


OsAffx.27540.1.S1_at

Description tigr:9634.m00967
TID=OsAffx.27540.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0994011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g09900Os.12115.1.S1_at11/116+5043932..5045020expressed protein
LOC_Os06g09910Os.48661.1.S1_at11/116+5053304..5055835Phosphopantothenoylcysteine decarboxylase, putative, expressed
LOC_Os06g09920NANA6+5056623..5057036hypothetical protein
LOC_Os06g09930Os.39747.1.S1_at11/116+5059665..5063953Identical to a putative G-protein-coupled receptor from , putative, expressed
LOC_Os06g09940OsAffx.27540.1.S1_at11/116+5067260..5067577hypothetical protein
LOC_Os06g09950OsAffx.15341.1.S1_at11/116+5070901..5071113hypothetical protein
LOC_Os06g09960OsAffx.27541.1.S1_at10/116+5081730..5083092expressed protein
LOC_Os06g09960OsAffx.24432.1.S1_at3/116+5081730..5083092expressed protein
LOC_Os06g09970OsAffx.4783.1.S1_at11/116+5084604..5085091hypothetical protein
LOC_Os06g09980Os.54864.2.S1_at11/116+5089958..5091121expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27540.1.S1_at--931--4771Chr06:5067309..5067333 (25 bp)
GCTGCGCGAGGCTGCTGAAGCCTAT
LOC_Os06g09940
OsAffx.27540.1.S1_at--459--6211Chr06:5067316..5067340 (25 bp)
GAGGCTGCTGAAGCCTATCCTCGAC
LOC_Os06g09940
OsAffx.27540.1.S1_at--760--8331Chr06:5067318..5067342 (25 bp)
GGCTGCTGAAGCCTATCCTCGACTT
LOC_Os06g09940
OsAffx.27540.1.S1_at--672--551Chr06:5067332..5067356 (25 bp)
ATCCTCGACTTCCTGGCGAACGGGA
LOC_Os06g09940
OsAffx.27540.1.S1_at--545--2051Chr06:5067339..5067363 (25 bp)
ACTTCCTGGCGAACGGGATGAGCCC
LOC_Os06g09940
OsAffx.27540.1.S1_at--43--3911Chr06:5067344..5067368 (25 bp)
CTGGCGAACGGGATGAGCCCCAGCA
LOC_Os06g09940
OsAffx.27540.1.S1_at--912--3811Chr06:5067480..5067504 (25 bp)
CTGCCGTGAAGCTGTCCATTGTCAC
LOC_Os06g09940
OsAffx.27540.1.S1_at--650--8991Chr06:5067486..5067510 (25 bp)
TGAAGCTGTCCATTGTCACCGCATT
LOC_Os06g09940
OsAffx.27540.1.S1_at--308--2691Chr06:5067488..5067512 (25 bp)
AAGCTGTCCATTGTCACCGCATTCA
LOC_Os06g09940
OsAffx.27540.1.S1_at--160--51Chr06:5067497..5067521 (25 bp)
ATTGTCACCGCATTCACGCTGGTCT
LOC_Os06g09940
OsAffx.27540.1.S1_at--118--7111Chr06:5067500..5067524 (25 bp)
GTCACCGCATTCACGCTGGTCTTCG
LOC_Os06g09940
Target Sequence 
GCTGCGCGAGGCTGCTGAAGCCTATCCTCGACTTCCTGGCGAACGGGATGAGCCCCAGCAGCGCCGCCGCCGACGCGGCC
ATCGTCGCCGCCCTCCTCGCCCTCGTCTTCGCCTACCTCGTCTGCGTCTTCCTCGTCTACCTCTCCGTCACTACCCCATC
GGCGGTCGCGGCTGCCGTGAAGCTGTCCATTGTCACCGCATTCACGCTGGTCTTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27540.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis