Browse Element(s) Details


OsAffx.27551.1.S1_at

Description tigr:9634.m01015
TID=OsAffx.27551.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1042011/11hydrolase, carbon-nitrogen family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g10380Os.14491.2.S1_x_at5/116+5331894..5334850transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g10380Os.47463.1.S1_x_at3/116+5331894..5334850transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g10390NANA6+5336000..5339629retrotransposon protein, putative, unclassified
LOC_Os06g10400NANA6+5341446..5341820hypothetical protein
LOC_Os06g10410OsAffx.27550.1.S1_at11/116+5344378..5347680Mechanosensitive ion channel family protein, expressed
LOC_Os06g10420OsAffx.27551.1.S1_at11/116+5355980..5357953hydrolase, carbon-nitrogen family protein, expressed
LOC_Os06g10430Os.22350.1.S1_at11/116+5358585..5366032expressed protein
LOC_Os06g10440NANA6+5368570..5371877gb protein, putative, expressed
LOC_Os06g10450OsAffx.15352.2.S1_at11/116+5373770..5375783expressed protein
LOC_Os06g10450OsAffx.15352.1.S1_s_at11/116+5373770..5375783expressed protein
LOC_Os06g10450OsAffx.15352.1.S1_x_at10/116+5373770..5375783expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006807biological_processnitrogen compound metabolism
GO:0009446biological_processputrescine biosynthesis
GO:0000257molecular_functionnitrilase activity
GO:0016810molecular_functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
GO:0050126molecular_functionN-carbamoylputrescine amidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27551.1.S1_at--661--251Chr06:5356593..5356617 (25 bp)
ATATCCCAGGAGACATCACTTTCAG
LOC_Os06g10420
OsAffx.27551.1.S1_at--197--5871Chr06:5356646..5356667 (22 bp)
GAGCCTACCATAGTTGACACTGATG
LOC_Os06g10420
OsAffx.27551.1.S1_at--1151--10111Chr06:5356916..5356940 (25 bp)
TATGTCATGACATCCGATTTCCAGA
LOC_Os06g10420
OsAffx.27551.1.S1_at--77--271Chr06:5357114..5357138 (25 bp)
ATATGCTATCCTTCTGCGTTTAACA
LOC_Os06g10420
OsAffx.27551.1.S1_at--753--6811Chr06:5357131..5357155 (25 bp)
GTTTAACATGAGCACCGGGCAGCTT
LOC_Os06g10420
OsAffx.27551.1.S1_at--882--3951Chr06:5357146..5357170 (25 bp)
CGGGCAGCTTCTATGGGACCTTATG
LOC_Os06g10420
OsAffx.27551.1.S1_at--1122--391Chr06:5357440..5357463 (24 bp)
ATCAGTTGTTTGTGGTGACCTGCTC
LOC_Os06g10420
OsAffx.27551.1.S1_at--79--5991Chr06:5357472..5357496 (25 bp)
GAGACCCTAATGCAGAATCGGACTA
LOC_Os06g10420
OsAffx.27551.1.S1_at--261--7951Chr06:5357800..5357824 (25 bp)
GGATAACCTCCCTTTGGAAATGCAG
LOC_Os06g10420
OsAffx.27551.1.S1_at--1160--6991Chr06:5357839..5357863 (25 bp)
GTACTCCACCCATTGGTTGATGTCA
LOC_Os06g10420
OsAffx.27551.1.S1_at--448--611Chr06:5357889..5357913 (25 bp)
ATGCGCCGCTTGACCAAATGCACAA
LOC_Os06g10420
Target Sequence 
ATATCCCAGGAGACATCACTTTCAGAGAATCTGACACATTCACTGCTGGTCAAGAGCCTACCATAGTTGACACTGATGTT
GGACGGATTGGCATTGGAATATGTCATGACATCCGATTTCCAGAATTGGCAATGCTGTATCGATCAAGAGGTGCACACTT
GATATGCTATCCTTCTGCGTTTAACATGAGCACCGGGCAGCTTCTATGGGACCTTATGCAGAAGTCCAGGGCTGTTGACA
ATCAGTTGTTTGTGGTGACCTGCTCGCCAGCTAGAGACCCTAATGCAGAATCGGACTACATGATCTGGGGCCATTCAAGT
CTTATTGGACCATTTGGGGAAGTCATTGCAACAGCAGGGCACGAGGAAGCAACTGTCGTAGGTGAAATCGACCATTCTAT
GATCCAAACAATAAGGGATAACCTCCCTTTGGAAATGCAGAGGAGAGAGGACCTGTACTCCACCCATTGGTTGATGTCAG
GAGAGAATCTGCAGGCCACAAGACATGCGCCGCTTGACCAAATGCACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27551.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis