Browse Element(s) Details


OsAffx.27561.1.S1_at

Description tigr:9634.m01073
TID=OsAffx.27561.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Eukaryotic aspartyl protease
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1101011/11Eukaryotic aspartyl protease family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g10980OsAffx.4795.1.S1_at11/116+5733508..5735154Xyloglucan fucosyltransferase family protein, expressed
LOC_Os06g10990Os.26715.1.S1_at11/116+5744189..5746210dnaK protein, expressed
LOC_Os06g11000OsAffx.27560.1.S1_at11/116+5756270..5757844hypothetical protein
LOC_Os06g11010OsAffx.27561.1.S1_at11/116+5758686..5760519Eukaryotic aspartyl protease family protein
LOC_Os06g11020OsAffx.15365.1.S1_at11/116+5772556..5776200Tic22, putative, expressed
LOC_Os06g11020Os.5159.1.S1_at5/116+5772556..5776200Tic22, putative, expressed
LOC_Os06g11030NANA6+5777929..5778228EF hand family protein
LOC_Os06g11040Os.27377.1.S1_at10/116+5783168..5787999expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0031225cellular_componentanchored to membrane
GO:0003677molecular_functionDNA binding
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27561.1.S1_at--893--8631Chr06:5759966..5759990 (25 bp)
TGGGAAGATACGACCGTGCCGCCAT
LOC_Os06g11010
OsAffx.27561.1.S1_at--1130--8531Chr06:5760050..5760074 (25 bp)
TGGAGATGCTTATCGCCAACGGGCA
LOC_Os06g11010
OsAffx.27561.1.S1_at--463--2051Chr06:5760145..5760169 (25 bp)
ACTTTTGCTCTCCTTGACAAGACCA
LOC_Os06g11010
OsAffx.27561.1.S1_at--51--2991Chr06:5760180..5760204 (25 bp)
AATGTCGTCGATTGGGTATCACCGG
LOC_Os06g11010
OsAffx.27561.1.S1_at--524--6891Chr06:5760195..5760219 (25 bp)
GTATCACCGGACATCAAGAGCGCGC
LOC_Os06g11010
OsAffx.27561.1.S1_at--1106--5871Chr06:5760212..5760236 (25 bp)
GAGCGCGCCAAGAATCATACATCTG
LOC_Os06g11010
OsAffx.27561.1.S1_at--101--491Chr06:5760243..5760267 (25 bp)
ATCGGAGCACGACTATTCTGGTTGG
LOC_Os06g11010
OsAffx.27561.1.S1_at--62--5551Chr06:5760359..5760383 (25 bp)
GAAACGTCTTCTACAACGATCCACA
LOC_Os06g11010
OsAffx.27561.1.S1_at--1019--9051Chr06:5760394..5760418 (25 bp)
TGCATGACCTTTGCTCAGAATCCTG
LOC_Os06g11010
OsAffx.27561.1.S1_at--561--1471Chr06:5760410..5760434 (25 bp)
AGAATCCTGCTCTCAGGTCTCAGAT
LOC_Os06g11010
OsAffx.27561.1.S1_at--122--5351Chr06:5760441..5760465 (25 bp)
GAACAGGGTTACTCGATCCTTCGGA
LOC_Os06g11010
Target Sequence 
TGGGAAGATACGACCGTGCCGCCATGGATGGGGGTTACACTCCTCTCTTCCGGTCAATCAACAGGCCAACCTACTCACTG
ACGATGGAGATGCTTATCGCCAACGGGCAGAGATTGGTGACATCGTCTTCGGAGATGATCGTCGATTCCGGGGCCCAGAG
GACGTCCCTGTGGCCTTCCACTTTTGCTCTCCTTGACAAGACCATCACGCAGGCAATGTCGTCGATTGGGTATCACCGGA
CATCAAGAGCGCGCCAAGAATCATACATCTGCTACTTATCGGAGCACGACTATTCTGGTTGGAACGGCACCATCACGCCC
TTCTCCAACTGGTCCGCCTTGCCTCTGCTGGAGATCGGCTTCGCCGGCGGTGCTGCACTCGCTTTGCCACCCAGAAACGT
CTTCTACAACGATCCACACCGCGGTTTGTGCATGACCTTTGCTCAGAATCCTGCTCTCAGGTCTCAGATACTGGGGAACA
GGGTTACTCGATCCTTCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27561.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis