Browse Element(s) Details


OsAffx.27566.1.S1_at

Description tigr:9634.m01116
TID=OsAffx.27566.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g114304/11GRAM domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11400Os.14423.1.S1_at11/116+6006464..6009098expressed protein
LOC_Os06g11400Os.14423.1.S1_x_at9/116+6006464..6009098expressed protein
LOC_Os06g11410Os.14184.1.S1_at11/116+6018598..6020854Cyclin, C-terminal domain containing protein, expressed
LOC_Os06g11420OsAffx.15370.1.S1_at11/116+6026824..6028446SKIP/SNW domain containing protein
LOC_Os06g11430Os.16961.1.S1_at11/116+6031432..6034427GRAM domain-containing protein, putative, expressed
LOC_Os06g11430OsAffx.27566.1.S1_at4/116+6031432..6034427GRAM domain-containing protein, putative, expressed
LOC_Os06g11440Os.7473.1.S1_at11/116+6035702..6049763transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g11440Os.49361.1.S1_at11/116+6035702..6049763transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g11450Os.55651.1.S1_at11/116+6057842..6059542Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27566.1.S1_at--133--10511Chr06:6031959..6031983 (25 bp)
TTCAGCTCTCCCAATTTTACCGGAG
LOC_Os06g11430
OsAffx.27566.1.S1_at--538--9571Chr06:6032022..6032310 (25 bp)
TCTTGAGTTCCCCAGAAAGCTTTGT
LOC_Os06g11430
OsAffx.27566.1.S1_at--781--1551Chr06:6032303..6032327 (25 bp)
AGCTTTGTTCTGCTAACGACGTTCT
LOC_Os06g11430
OsAffx.27566.1.S1_at--370--4091Chr06:6032319..6032343 (25 bp)
CGACGTTCTTCATCTTTCTCAAATA
LOC_Os06g11430
OsAffx.27566.1.S1_at--1126--1931Chr06:6034581..6034605 (25 bp)
ACGGCTGTGATCCAAGCGGTCTACA
NONE
OsAffx.27566.1.S1_at--997--191Chr06:6034612..6034636 (25 bp)
ATTTCGAGCTGAGCGACGTGTCGTT
NONE
OsAffx.27566.1.S1_at--37--8631Chr06:6034639..6034663 (25 bp)
TGGTGGCAGAGCTTCAATCCTTACT
NONE
OsAffx.27566.1.S1_at--1053--9151Chr06:6034663..6034687 (25 bp)
TGCGCCTGAATTTCATTTCCTGGAG
NONE
OsAffx.27566.1.S1_at--412--6791Chr06:6034689..6034713 (25 bp)
GTTAGTCATGTACCTCGGCTATATA
NONE
OsAffx.27566.1.S1_at--839--3691Chr06:6034738..6034762 (25 bp)
CTATGGGTAGTGTCTGCGATCCGGC
NONE
OsAffx.27566.1.S1_at--321--9251Chr06:6034781..6034805 (25 bp)
TCCTACTCCGGCACAAATCATGTAC
NONE
Target Sequence 
TTCAGCTCTCCCAATTTTACCGGAGCCTAGCTTTTTTTTGTTCCATTGTTTGCAAGATTCATTTCTTGAGTTCCCCAGAA
AGCTTTGTTCTGCTAACGACGTTCTTCATCTTTCTCAAATAATTGAATATCCAAAGGAACTGGTGGTCATTCCTCTGCAC
CAGCTAAGAGCGGCTAATCCTTCAGTGAGCAAAGTAAACCCTGCTGAAAAGTATATTCAGGTTGTTTCAGTTGAAGGCCA
CGAGTTCTGGTTCATGGGTTTTCTGATGTATGACAAAGCCGGAGTCCAGGCAGCAGTGGAGATGGGAATAGGGCGGGGGA
TGATTGAGACAGACGCGACGGCTGTGATCCAAGCGGTCTACACAAACGATTTCGAGCTGAGCGACGTGTCGTTCCTGGTG
GCAGAGCTTCAATCCTTACTGCGCCTGAATTTCATTTCCTGGAGTGTTAGTCATGTACCTCGGCTATATAACAGAGTAGC
TCATGAACTGGCAGCTATGGGTAGTGTCTGCGATCCGGCGGAGGCCCCTGTTTTGGCTCCTACTCCGGCACAAATCATGT
AC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27566.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis