Browse Element(s) Details


OsAffx.27591.1.S1_x_at

Description tigr:9634.m01268
TID=OsAffx.27591.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1280011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12769NANA6+6968787..6969403NA
LOC_Os06g12780Os.24795.1.S1_at11/116+6979037..6985314DegP protease, putative, expressed
LOC_Os06g12790Os.4079.1.S1_a_at11/116+6989940..6993528RAC-like GTP binding protein ARAC10, putative, expressed
LOC_Os06g12790Os.4079.2.S1_a_at11/116+6989940..6993528RAC-like GTP binding protein ARAC10, putative, expressed
LOC_Os06g12800OsAffx.27591.1.S1_x_at11/116+6994344..6995672expressed protein
LOC_Os06g12800OsAffx.27591.1.S1_at11/116+6994344..6995672expressed protein
LOC_Os06g12810OsAffx.15396.1.S1_at11/116+6999437..7003405expressed protein
LOC_Os06g12810OsAffx.15396.1.S1_x_at11/116+6999437..7003405expressed protein
LOC_Os06g12820Os.51692.1.S1_at10/116+7004873..7007331expressed protein
LOC_Os06g12830Os.53094.1.S1_at11/116+7018835..7021062expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27591.1.S1_x_at--1098--9171Chr06:6994915..6994939 (25 bp)
TGCCGTTGCTCGACTACGCGGTGAT
LOC_Os06g12800
OsAffx.27591.1.S1_x_at--341--9371Chr06:6994906..6994930 (25 bp)
TCGACTACGCGGTGATCTCCAACGG
LOC_Os06g12800
OsAffx.27591.1.S1_x_at--507--9931Chr06:6994901..6994925 (25 bp)
TACGCGGTGATCTCCAACGGCAACT
LOC_Os06g12800
OsAffx.27591.1.S1_x_at--827--7751Chr06:6994896..6994920 (25 bp)
GGTGATCTCCAACGGCAACTGGTTC
LOC_Os06g12800
OsAffx.27591.1.S1_x_at--835--9831Chr06:6994694..6994718 (25 bp)
TACACGCCGGACCACTTTGAGCACG
LOC_Os06g12800
OsAffx.27591.1.S1_x_at--934--1971Chr06:6994648..6994672 (25 bp)
ACTGCAACAGGACGCGGCCATTGGA
LOC_Os06g12800
OsAffx.27591.1.S1_x_at--888--991Chr06:6994621..6994645 (25 bp)
AGGATGAGGTGAGCTCGGGCGTCAT
LOC_Os06g12800
OsAffx.27591.1.S1_x_at--357--9431Chr06:6994607..6994631 (25 bp)
TCGGGCGTCATTGCCTGGGAGCTGA
LOC_Os06g12800
OsAffx.27591.1.S1_x_at--466--4271Chr06:6994594..6994618 (25 bp)
CCTGGGAGCTGAGGGCGGCGCAGAT
LOC_Os06g12800
OsAffx.27591.1.S1_x_at--756--8011Chr06:6994432..6994456 (25 bp)
GGAGGAATGCCAACGACTGCCTGCA
LOC_Os06g12800
OsAffx.27591.1.S1_x_at--1147--9691Chr06:6994387..6994411 (25 bp)
TCAACATGTGGAACGACGTGCTGCT
LOC_Os06g12800
Target Sequence 
TGCCGTTGCTCGACTACGCGGTGATCTCCAACGGCAACTGGTTCTTCCGCGCCAACTACCTCTGGGAGGGCGGCCGCCGC
GTCGGCTGCGTCGACTGCGGCGAGCCCGGCCTCGCCCACTTCCCCATGGCGTACGCCGTCGGCCGCGTCGTCGGCGCGGC
GCTCGACGCCATCGCCGGGTGCGCGGACTGCAAGCGCGAGCTCGTCGCGCTCGTGCGCACCTACACGCCGGACCACTTTG
AGCACGGCTCGTGGTTCAGCGGCGGCTACTGCAACAGGACGCGGCCATTGGAGGAGGATGAGGTGAGCTCGGGCGTCATT
GCCTGGGAGCTGAGGGCGGCGCAGATCGAGGAGGTGAGGAAGGCGAGGGAGAAGGTGACGACGACGATGAGGACGAGGAG
GAGGTTCGGCGTGGTGGACGTGACGCCGGCGATGATGGCGCGTGCCGACGGGCACCCCGGCGAGCACCACCGCAGGTGGA
GGGGGAGGAATGCCAACGACTGCCTGCACCTATGCTTGCCGGGGCCCATCAACATGTGGAACGACGTGCTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27591.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis