Browse Element(s) Details


OsAffx.27596.1.S1_at

Description tigr:9634.m01288
TID=OsAffx.27596.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BT006128 putative methyltransferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1299011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12960Os.50155.1.S1_at11/116+7092926..7095195expressed protein
LOC_Os06g12970NANA6+7096595..7101079retrotransposon protein, putative, unclassified
LOC_Os06g12980OsAffx.27595.1.S1_at10/116+7101965..7105822Cyclin, N-terminal domain containing protein
LOC_Os06g12990OsAffx.27596.1.S1_at11/116+7118075..7119404expressed protein
LOC_Os06g12990Os.13757.1.S1_at11/116+7118075..7119404expressed protein
LOC_Os06g13000OsAffx.27597.1.S1_at11/116+7120121..7122027Ankyrin repeat protein, chloroplast precursor, putative, expressed
LOC_Os06g13010OsAffx.27598.1.S1_at10/116+7124667..7126893RNase H domain-containing protein, putative, expressed
LOC_Os06g13020OsAffx.983.1.S1_at10/116+7127121..7132516DNA polymerase lambda, putative, expressed
LOC_Os06g13030Os.18748.1.S1_at7/116+7132792..7139004LIM domain containing protein, expressed
LOC_Os06g13040OsAffx.15401.1.S1_at10/116+7143532..7145046Glycosyl hydrolases family 16 protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27596.1.S1_at--977--3511Chr06:7118368..7118392 (25 bp)
CATGATCGGCATGGAGCTCAGGGAC
LOC_Os06g12990
OsAffx.27596.1.S1_at--1055--7011Chr06:7118806..7118830 (25 bp)
GTCAAAGAGCGGATTTTGGCTTTAA
LOC_Os06g12990
OsAffx.27596.1.S1_at--1150--8291Chr06:7118823..7118847 (25 bp)
GGCTTTAAGAGCATCGAATCCGGGA
LOC_Os06g12990
OsAffx.27596.1.S1_at--561--531Chr06:7118840..7118864 (25 bp)
ATCCGGGAAAGTACGACAACATATC
LOC_Os06g12990
OsAffx.27596.1.S1_at--215--2211Chr06:7118855..7118879 (25 bp)
ACAACATATCTGTCGTGCGCACCAA
LOC_Os06g12990
OsAffx.27596.1.S1_at--87--7211Chr06:7118866..7118890 (25 bp)
GTCGTGCGCACCAATTCGATGAAAT
LOC_Os06g12990
OsAffx.27596.1.S1_at--1088--2931Chr06:7118911..7118935 (25 bp)
AAGGCTCAGCTTTCGAAAATGTTCT
LOC_Os06g12990
OsAffx.27596.1.S1_at--1033--2431Chr06:7118926..7118950 (25 bp)
AAAATGTTCTTCCTGTTCCCTGATC
LOC_Os06g12990
OsAffx.27596.1.S1_at--226--9311Chr06:7118942..7118966 (25 bp)
TCCCTGATCCTCACTTCAAGGAGAA
LOC_Os06g12990
OsAffx.27596.1.S1_at--908--2631Chr06:7118968..7118992 (25 bp)
AACCACCGGCGGAGGGTGATCAGCA
LOC_Os06g12990
OsAffx.27596.1.S1_at--965--7751Chr06:7118982..7119006 (25 bp)
GGTGATCAGCATGCAGCTGCTAGAT
LOC_Os06g12990
Target Sequence 
CATGATCGGCATGGAGCTCAGGGACAAGGTGACTGAGTATGTCAAAGAGCGGATTTTGGCTTTAAGAGCATCGAATCCGG
GAAAGTACGACAACATATCTGTCGTGCGCACCAATTCGATGAAATACATTCCAAACTATTTCAGGAAGGCTCAGCTTTCG
AAAATGTTCTTCCTGTTCCCTGATCCTCACTTCAAGGAGAAGAACCACCGGCGGAGGGTGATCAGCATGCAGCTGCTAGA
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27596.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis